SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP, Martien Groenen, Max Rothschild, Miguel Perez, Kwan-suk Kim, Gary Rohrer groups
Scores: [ Quality Score / Info. Score ]
(a) Sequence quality score: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
(b) Information score: Range: 10-70. The presence of (1) minor allele frquency (MAF), (2) chromosome location, (3) annotation, each add 20 to the total "info score".
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu (about the compilation of this data set).
Date: July 31, 2008

Records 9201 - 9300:

Custom Name	dbSNP id	Molecule	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	MAF	MAF Species	Chromosome	Annotation	Reference	Source	Scores (seq.qual/info)
LS187	ss86352264	Genomic	TTCACCATAGGATCATCAAGCACATTGTGA ATTTGCTCTTATGAATTGTCCCCAGTGCCA	A/G	CGTCCCTTCCAAAAATGCCAACCTTAATAT TCACATTCTCAAGGAGTGTCCGAGGAGACA		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	120 / 30
LS192	ss86352269	Genomic	AATCCTGTTGGCAATATCATGTCCCTTCCA GACAACCGGGAAGGGTACTGCTTCACGGAG	A/G	TGCTCCAAAACATGTGTCAGATCGGCTCCA GCAACAGGAACCCCGTCACCAAGTCTGAAT	0.0933	Large White, Landrace	1	FBN1\|Fibrillin 1\|FBN1	By sequencing	Max Rothschild (Fan)	120 / 70
LS193	ss86352270	Genomic	AGTGCTAGCCACATGGCTGGGCTGCCTGGT GGCCAGCGCGCCGCAGGTGCACATCTTCTC	T/G	CTGCGCGAGGTGGCCGACGGCGTCTTCGAT TGCTGGGCCGTCTTCATCCAGCCCTGGGGG	0.2707	Large White, Landrace	13	OXTR\|Oxytocin receptor\|OXTR	By sequencing	Max Rothschild (Fan)	120 / 70
LS196	ss86352273	Genomic	GCTTAGTATTTAAAAAACACACTGTCATTT ACAAACTACCAATCATTTTAATTATTATTC	C/T	GCATAACAATCTTGGGAGGACCAGGGTTAC TGACTATGGCTACCAAAAAGGTTCTACCCA		Large White, Landrace		\|\|IL1A	By sequencing	Max Rothschild (Fan)	120 / 30
LS197	ss86352274	Genomic	TGCTCTCCCTTCCGAGCCCCTGGCGCGGGC CCCACAGCGGCCTCTGGCAGGTGGCCCTGG	C/T	GCTGCAGGCCCGGAGACAAGAGCTCCCATG GAGACCCACAGACGACCTGCCTGGCTACTT		Large White, Landrace		\|\|TCIRG	By sequencing	Max Rothschild (Fan)	120 / 30
LS198	ss86352275	Genomic	GCGTTAGCAGAGGGACGGGTATTCACAGCA GAAGGATGCGTACACTCGGCTCCAGCCACA	C/T	AGGTCTGGAAGCGGACACACAACCGCCGTT AGAGGTCACCATGCAGGGGACTGAGGTGGC	0.195	Large White, Landrace	1	NFATC1\|Nuclear factor of activated T-cells, calcineurin-dependent 1\|NFATC1	By sequencing	Max Rothschild (Fan)	120 / 70
LS199	ss86352276	Genomic	TTTTCCTCCAGAACCGATTCAAGCTAGTCA ACAGTGCCAACATCAGGCTGACGGCCATGA	C/T	GCTGAAAACCAATCAGGTGGCCATCGCCCA GACCCTGGAGTGCAGGGCATCCCGCCGGCA	0.2857	Large White, Landrace	8	Nocturnin\|Nocturnin\|NOCT1	By sequencing	Max Rothschild (Fan)	120 / 70
LS200	ss86352277	Genomic	CCTTCTCCAGAACCTGCAGAACATCACCCA GGGAGACAAGATCCCCCTCATTATCTGTGG	A/G	GACTTCAACGCAGAGCCAACAGAGGAGGTC TACAAACACTTTGCTTCCTCCAGCCTCAAC		Large White, Landrace		\|\|NOCT1	By sequencing	Max Rothschild (Fan)	120 / 30
LS201	ss86352278	Genomic	TGTTCCGAAAAAACTATATCGAGTGACTCA AAAGGTGCCTCTCGTGATTGAAAAAAAAAG	A/C	TCCTGATGTTAAAGGTCCAAGTCAAGAGTG AAGCAAATTGCTTCATGAAATGCGAGAGCG		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	120 / 30
LS202	ss86352279	Genomic	GGTCGGCATGGGGTCATCCTTTGACGGCCA TGACGAGGTGGACAGGAAGAGCAGAGCCGC	C/G	TACAACCTAACTTTGTTGAACTTCATGGAT CCCCAGAAAATGCCGTACCTGAAAGAGGAG		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	120 / 30
LS205	ss86352282	Genomic	AGAGCTTTTCTCACCTTTTCTCATCCTATG GCTGTGAAGTTAATTGGAGGAGAATTGAGC	A/G	ACGAAGTGTATCGTCCTCGATTGTCCGTCA CGGGGGCGTCTAACCATAGTCTTGTCTTTA		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	120 / 30
LS208	ss86352285	Genomic	AGCTGTTGGACCTGGGAAATTCTCTTGCTC CAAACCCCGAGGCGAATTCCGGCGTAGCCG	C/T	GGTGCGCTCTGGGAGTGGTAGTTCTCGCGG CTCCGAGAGCGAATGGCGCCAGGCGGGAGC		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	120 / 30
LS209	ss86352286	Genomic	ATCCCAAATGGAAACCAGTCCCTTCCCCTT TTGCATAAGACGATGACGCAGTGGGCAGGA	A/G	CTGGATTGGGAAAGGCCCTGGTGCTCAAAG GGAGGCCCCCACCAGCGCTAGGGGCCTCCC	0.2385	Large White, Landrace	17	BMP7\|Bone morphogenic protein 7\|BMP7	By sequencing	Max Rothschild (Fan)	120 / 70
LS215	ss86352292	Genomic	GACTCGAAATCCACGCCTGTGCTCAACAGA TGGTTCTGGACCCAGTGCAGCCGGAGGCAC	A/G	ACCCCCAAGTCCCTTCCTGCACGGAGTGCA CCAGCTTCACCGTAGAAACGGTGCCATAAA		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	120 / 30
LS216	ss86352293	Genomic	GTTGTCTCCGTGGCTTTTGTCCCAGCAGAC GCGCGGGGGCCAGGCCGAGGCGATGCCCGG	C/T	CGCAGCCCACCAACGTTTCGGTGTGTGTTC CAGGTCCACTTCATCAACCCTGAGACGGTG		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	120 / 30
LS217	ss86352294	Genomic	AGCCCTGCCCGAGGCCCGGCCACCCAGGGC CACCGCCGTGGCGAGGAGCCCGCAGACCAA	A/G	GCGGCTGCCTTGCCAGACCGTCTGTCCCCC TCCCCAACTTGAACGGTGCAGGCGTGTGAG		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	120 / 30
LS218	ss86352295	Genomic	ATTATCTGCAAAAATATTCCTTGGCTTGTG AGTGGCTGGGTAAAACCCATCATCATAGGT	C/T	GTCATGCTTACAGGGATCAATACAGAGCAA CACATTTTGTTGCTCCTGGGCCTGGAAAAG	0.1076	Large White, Landrace	15	IDH1\|Isocitrate dehydrogenase 1\|IDH1	By sequencing	Max Rothschild (Fan)	120 / 70
LS221	ss86352298	Genomic	GACCCAGCAAGAAGAAAGGTGAAGACCGGC CGCCAAGAGCCAGGAGGGAAACACTGACCA	T/G	TAGAAACCTTTGCAGAGGACACTGCAAGGA AGAACACAAGAGAGAGAAAAACACAAAAGA		Large White, Landrace		\|\|NRP2	By sequencing	Max Rothschild (Fan)	120 / 30
LS222	ss86352299	Genomic	ATGAGACCCACCCGCCTCCCCAGGGGCTCC CAGAACGCCCACCACCTCATGGCAGCCCCC	C/T	GCCCCCAGGACCTGCTGAACAGTGGTGCAT CTTGGCCCCAGAAGGAAACCTCAACAGGTT	0.2951	Large White, Landrace	15	NRP2\|Neurophilin 2\|NRP2	By sequencing	Max Rothschild (Fan)	120 / 70
LS223	ss86352300	Genomic	GCCGTAGGAACTCCTCAAGTTTATTCATTT TTAAAGAATGTTATTTCCAACTAGAACTTT	A/T	AAAAAAAGCGATTTGTAAATGTTTTCTCTT TCAGCCTGATGTGTGAAAAAAGAATTTTTG	0.2206	Large White, Landrace	6	PKN2\|Protein kinase N2\|PKN2	By sequencing	Max Rothschild (Fan)	120 / 70
LS231	ss86352308	Genomic	GAACAGGCTCTGCAAACGGCCCATACACAG AGGCCCCGCCCGGCAAATATTTACCTCCCA	C/T	TCTTGCCTCTCCTCTCGGCAAAGAAGGGCC AGTGCCCTCTCCACAGCTCTGAGGCTGGGC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	120 / 30
LS232	ss86352309	Genomic	GAGGCTTCTCACCTACCCACAACAAGAGGC TTGACTCTGGCCTCGGCCTTCGGCCCCTCT	C/G	AGAAGCTTACTACTCCCTTTTGGGGAGAGA GGGGCAGGCCAGGTCTATTCCACCATGATG		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	120 / 30
LS235	ss86352312	Genomic	ATTCCCCAGGTCCTCTAGATTCCAGTTTAC CCCATGGACAACCGAAACTTTCTACAGGTC	A/G	CTAAATCCTCCTGCAGACTCCCACATCCTC TCATGAGCCCCCAGACCATTGCTCCCCCTG		Large White, Landrace		\|\|COMP	By sequencing	Max Rothschild (Fan)	120 / 30
LS236	ss86352313	Genomic	ACTCCCCTATTGCCAGGAGCGGTCTGCCTC AACGACCCCCCTCACCGCCGCGTGTCTCAA	A/G	CCCCATCATTGGGGGACCCGCGTCCCAACG ACCTCCTCGCCGCCGGGCACGCGCATCCCG		Large White, Landrace		\|\|COMP	By sequencing	Max Rothschild (Fan)	120 / 30
LS237	ss86352314	Genomic	GGTTGGGAGCAAGATGTAGGGGAGAGTAGG ATTCAAAGGCGTGAACCGGGTGGGACGTCT	A/G	GGGGTATCTGCCTGAGAGCAGTGACCTTTG GGCTCCCTCTCACCCAGGTTTGCACGGATA		Large White, Landrace		\|\|COMP	By sequencing	Max Rothschild (Fan)	120 / 30
LS238	ss86352315	Genomic	GATATTAATGAGTGTGAGACCGGGCAGCAT AACTGCGTCCCCAACTCCGTATGCGTCAAT	A/G	CCGTGGTAAGGCCTGGGAGAAGAGGGGAAG GATTGAGAGATGGAGGATTGGGCGCGAAGA		Large White, Landrace		\|\|COMP	By sequencing	Max Rothschild (Fan)	120 / 30
LS242	ss86352318	Genomic	TCCTTCTCGCGGTCTTGATAACAACATCAA AAATGAAATGGGTTCCCATAGCGACCCCAA	C/A	AATGAGGGGACCATAATAACACATGGCAGA AAAAATCACGATGTACACTACAGACAAAAT		Large White, Landrace		\|\|MEPE	By sequencing	Max Rothschild (Fan)	120 / 30
LS243	ss86352319	Genomic	TCTGGTTATCATGAAGCCCAGCCTGTTCCC CACCTTGTCCACCAAACTCAGACCCACCTG	A/G	CCTTTGCCCCTCTGCTCCATAGCCTTCGTG TCCAAGCAGGAGGGCACCGAGGTGGTGAAG		Large White, Landrace		\|\|BGLAP	By sequencing	Max Rothschild (Fan)	120 / 30
LS246	ss86352322	Genomic	ACCTCGGAGCCATGACCGGAAGAGCCCTAT GGGTCATATGGTTCAGCGCAGGGTGGCTGG	A/G	CTCCAGCAGAATCTATTCCTATAACTGTCT ACGTTCATATTAGACCATTCCCGTGGGCAC	0.2147	Large White, Landrace	8	OPN\|Osteopontin\|OPN	By sequencing	Max Rothschild (Fan)	120 / 70
LS247	ss86352323	Genomic	GCCCAGCTGGCAGCCTCTCCATGGGTCTCC AGCCCCAGGCCCCGCCCATCAGCCTAGCCC	G/C	GTCTCAGCTGTGCCCCACAACGCCCCCTAG GCTTTTAAAATGGGCCTCCAAGATTCTCTT	0.4161	Large White, Landrace	17	MMP9\|Matrix metallopeptidase 9\|MMP9	By sequencing	Max Rothschild (Fan)	120 / 70
LS250	ss86352326	Genomic	AGGTACCAGCCCAGGGGCTGTGGGTCAGGG TCAAGGCTATCTCAGCAGGGGCTTGAGGGC	G/T	ACTATGCCCAGGACCTGAGTGGGCCAGAAG GCTGGATCCCAGCCTGTGGTCCCTGGCTGG		Large White, Landrace		\|\|VTN	By sequencing	Max Rothschild (Fan)	120 / 30
LS252	ss86352328	Genomic	AGTCAATGCTACACATACACCCGTGAGGTC AGACAGCTGGGAGTTTTGTGTCCCTGGTTA	G/A	ATGACCCTAAAAGAGGCTGTGGAGTGTGAT CTCTGCATTAATTACAAGTTTGGAAAACTC		Large White, Landrace		\|\|IGF1	By sequencing	Max Rothschild (Fan)	120 / 30
LS253	ss86352329	Genomic	ATGCTGAAGAGGGCGCTGCCCACTGCCAAC TGTACCAGGACAGACCGGTCCTGCTGGAGC	T/C	GCCAGCGGGACAGAGGTCTGAGCAGCAGAT AGAGGACAGCGCCACTCGCCAGGGTGCCCA		Large White, Landrace		\|\|DARC	By sequencing	Max Rothschild (Fan)	120 / 30
LS254	ss86352330	Genomic	TTTGGGGAGGGGCTGCCCTACTGTCACTGC CAATCACCCTGGCCAGTGACACATCCCATG	A/G	GTTCTGCACCCCGACATTTAGTGGAAGTTG GGAAATTTTGCGGTATATCCACGCTGCTGC		Large White, Landrace		\|\|DARC	By sequencing	Max Rothschild (Fan)	120 / 30
LS255	ss86352331	Genomic	ATCACTCTTGGCTCGGTGAGTCACGGCAGG GACAGGCTTTGCGCAGCCCCGCCTTCCCGC	C/T	TTCAGATGTCCCGGCCCCGGGTGCCGAATT CCAGCGCCTTCGCCGTGGGCACAGGGAGCG		Large White, Landrace		\|\|FGF4	By sequencing	Max Rothschild (Fan)	120 / 30
LS263	ss86352339	Genomic	ACTTTGCTCTTGGCTCTGATGTTTTATTTC CCACTCTTTAGTGAGTTATTACAGCCCCAT	G/T	GTGAAGAGTTCTAAACGTGTAAATTATTTC TCAGCAAGTTTAGGAATGATACCCCAGTGT	0.303	Large White, Landrace	1	NPP1\|Ectonucleotide pyrophosphatase 1\|NPP	By sequencing	Max Rothschild (Fan)	120 / 70
LS264	ss86352340	Genomic	ACAAAGGGCAAGATTTCGAATCAATCCAAC GGTAGCCTGTAGACAAGAAGGACGAGTGAC	G/A	AACTGTCATACAACTCAGCAAAATCATTTT CTTATCTTAAAATCCCTGCCACACTAAATC		Large White, Landrace		\|\|�-catenin	By sequencing	Max Rothschild (Fan)	120 / 30
LS265	ss86352341	Genomic	TTTCCTATTTAGTAAAGAATACAACTCCTA TTTATCAATCCCTGACACCTAGACAGCCAT	G/C	TAATAACAGCTAGAGATAGTTCATTTTCAA TTCAGCAACCTTCTACTCTGATTGACAACT	0.4439	Large White, Landrace	13	CTNNB1\|Catenin (cadherin-associated protein), beta 1\|�-catenin	By sequencing	Max Rothschild (Fan)	120 / 70
LS269	ss86352345	Genomic	TCTTCCATCCCAGTGATGGGGGCTCCAACA GAGGAGTGGGGCTGTGGTGAACCTCCGGTG	G/C	TGCTGTCCTCGACGCCTGGGGTCTCCGATG ACTCAAAGGTCTGGCAGGTGCTCCTGGGTG	0.2009	Large White, Landrace	4	CSF1\|Colony stimulating factor 1\|CSF1	By sequencing	Max Rothschild (Fan)	120 / 70
LS272	ss86352348	Genomic	GGCCCTTGGGGCATACGCTCCCTTAACGAG GCATGGGACGCTGGTGGTGGAGGATGTGGT	G/A	GCCTCCTGCTTCGCGGCCGTGGCTGACCAT CATCTGGCTCAATTGGCCTTCTGGCCCCTG		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	120 / 30
LS279	ss86352355	Genomic	CATTAATCTCATTCCGAACAAGCAAGACCG GACCCTCACGATAGTGGACACCGGCATCGG	C/A	ATGACCAAGGCCGACTTGATCAATAACCTT GGTACGATCGCCAAGTCTGGGACCAAGGCG		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	120 / 30
LS191	ss86352268	Genomic	AAATAGCAAGAATCACCATGCAACCAAAAC AACAAAAAAGGAACATGAAAAATGACAGAT	A/G	GTCTATTTACTTACGGACAATACATTGATT TCCACCAGGTAAGGTTTTCCATCCAGGNCA		Large White, Landrace		\|\|FBN1	By sequencing	Max Rothschild (Fan)	119 / 30
LS194	ss86352271	Genomic	CTCAGAGATTCCATACATTGTGATGAACCC CGAGACAAAAGCACGGAGAGCTGGGCAGAG	C/T	GTGTCCCTGTGCTGTAAGGCCACAGGGAAR CCCAAACCAGAGAAGTATTTCTGGTGAGTA	0.124	Large White, Landrace	1	CILP\|Cartilage intermediate layer protein\|CILP	By sequencing	Max Rothschild (Fan)	119 / 70
LS195	ss86352272	Genomic	CGAGACAAAAGCACGGAGAGCTGGGCAGAG YGTGTCCCTGTGCTGTAAGGCCACAGGGAA	A/G	CCCAAACCAGAGAAGTATTTCTGGTGAGTA TTCTGCCAGCTACCTGGCCGATTCTCCTCT		Large White, Landrace		\|\|CILP	By sequencing	Max Rothschild (Fan)	119 / 30
LS203	ss86352280	Genomic	CTGTATATTTTAGGATCTCAGGATTTGTTG TCGATTGACTTATAGTTTTCTCACGTCTGA	A/G	GGATGAAAGTGACAGGAARCCCCCTCCCCC TCCTGCCCTGGGTTGTCTCACTAAGCTTTC		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	119 / 30
LS204	ss86352281	Genomic	AGGATTTGTTGTCGATTGACTTATAGTTTT CTCACGTCTGARGGATGAAAGTGACAGGAA	A/G	CCCCCTCCCCCTCCTGCCCTGGGTTGTCTC ACTAAGCTTTCAGACTACTCTCTTCTTGAC		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	119 / 30
LS206	ss86352283	Genomic	GGGCCGGGCTGCTCTTCACGCGAGCAGAAC TCCAGGGTCTTCTCCAGATGGTAGAGCAGA	C/G	CCCAGGACCGTGGCCCGTGCTGCAGATCTG CCCCCTTCCTCCCCTGTGCTCCYCCAGAAT		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	119 / 30
LS207	ss86352284	Genomic	GAGCAGASCCCAGGACCGTGGCCCGTGCTG CAGATCTGCCCCCTTCCTCCCCTGTGCTCC	C/T	CCAGAATACTCACCGCCACTCTCTCTCAGC CGCTAGTTACCGTTGCTATAGCGCCGACGG		Large White, Landrace		\|\|FTO	By sequencing	Max Rothschild (Fan)	119 / 30
LS213	ss86352290	Genomic	GATTGGGCGGCAAGGGCCCCAGAACAAGCA GCCCTTCATGGTGGCCTTCTTCAAGGCCAC	C/T	GARGTCCACCTCCGCAGCACCCGCTCCACG GGTGGCAAGCAGCGCAGCCAGAACCGCTCC		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	119 / 30
LS214	ss86352291	Genomic	TGGGCGGCAAGGGCCCCAGAACAAGCAGCC CTTCATGGTGGCCTTCTTCAAGGCCACYGA	A/G	GTCCACCTCCGCAGCACCCGCTCCACGGGT GGCAAGCAGCGCAGCCAGAACCGCTCCAAG		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	119 / 30
LS219	ss86352296	Genomic	CGCGCGCTTGGGGAGGCCCTGGCTCCGTGC GCCTGGGACCCCCTCACCCCACCCTGGCTC	A/T	CTCCCAGCGCGGTGAAGATCTCGGCCTCAC TCATGGGCACCGTGATGGCGAAGCGAGTGA	0.1292	Large White, Landrace	18	ENOS\|Endothelial nitric oxide synthase 3\|eNOS	By sequencing	Max Rothschild (Fan)	119 / 70
LS220	ss86352297	Genomic	GCCTCACTCATGGGCACCGTGATGGCGAAG CGAGTGAAGGCGACAATTCTGTACGCCTCC	A/G	AGACCGGCCGGGCCCAGAGTTACGCACAGC AGCTGGGGAGGCTCTTCCGGAAGGCTTTCG		Large White, Landrace		\|\|eNOS	By sequencing	Max Rothschild (Fan)	119 / 30
LS224	ss86352301	Genomic	TCTGGGTGTGGCCTCACCTTTTCCTCCTCT AGAGATGGGGGGAGATATCAAAAGGTAGAC	A/G	GTGTCTACCAATTTCTTGACCCTTCCTCCT CATCTATCCAGATTTGATGCCCCAACGCCC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	119 / 30
LS226	ss86352303	Genomic	CAACTCAGAGGACGAGCTCCCKGAAGACTA CCCAGTGGTCAAAAATATGCTTCACAGACT	A/G	ACAGGTAAGGAGGGCAGAAAGGAGGGAACT GAATGAGTCTGTTTTCGTTTGGTCCCCTTT		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	119 / 30
LS227	ss86352304	Genomic	CCGCGCCCCTCTCCGCATCGTGCCCGCAGA AGGCTGAGAAGCTCGCCCGCAACCCCCATT	C/T	TGGTTTGGCCCGAATCAAGGCATGGAAATC CTTACTCGTTCCAGGGGTCAAGTCCACGCC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	119 / 30
LS233	ss86352310	Genomic	GGATTTGATCTCTGCAACTGTGCATGGCAA GAGGCCTGGAAAATGACATCCAGATCCCGG	C/G	AAGGGGTGCAGAGGGCCAAGAGAGCTGGAC ACCTGGGCTGGCAGAGACACCAATGCTTAG		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	119 / 30
LS239	ss86352316	Genomic	GATCTATTAGTTCTTGTCATAAAGAAACCT AAAGTCCAGTAGAAAATATGACTGAAAATA	G/A	TTAAGTAGAAGATAAATAAGAAAGAACTAA GCTTAACTAAAGAGTCACAGATGGGAGTTC		Large White, Landrace		\|\|LRP6	By sequencing	Max Rothschild (Fan)	119 / 30
LS248	ss86352324	Genomic	GAAACCCTTTGATGCCTTCACCAACCTCAA GAACGGTTCCGTCTTTGCCTTCCGAGGTGA	C/A	TGGAATGGCAGACCTTGGGACTAGGGTCTG CCGCAGGAGCATCCTGCCTCACACGGCCTC		Large White, Landrace		\|\|VTN	By sequencing	Max Rothschild (Fan)	119 / 30
LS249	ss86352325	Genomic	CCTTGGGACTAGGGTCTGCCGCAGGAGCAT CCTGCCTCACACGGCCTCCCTTCCTCTAGG	A/G	CTGTACTGCTATGAGCTGGATGAAAAGGCA GTGAGGCCTGGGTACCCCAAGCTCATCCAA	0.2102	Large White, Landrace	12	VTN\|Vitronectin\|VTN	By sequencing	Max Rothschild (Fan)	119 / 70
LS256	ss86352332	Genomic	GGGCCCGAGACGCGTGCCCATGTCCAGGCC GGGCTCGAGGGCCGCGGCGGCCACCTCTCT	G/C	CTGCTGTCCGGGACTGGGCGCGGCCCCCAA GGGGCCGGAACAGGGGGCGAACGGGCTGGA		Large White, Landrace		\|\|FGF4	By sequencing	Max Rothschild (Fan)	119 / 30
LS257	ss86352333	Genomic	GCGGCCCCCAAGGGGCCGGAACAGGGGGCG AACGGGCTGGACGCCGGGGGCCCCTTGGGG	A/G	CGGTCGGCCTGCACCGGGGAGCTGGGCCCC TTTACATTCACCTCCACCCCAGAGATGGGG		Large White, Landrace		\|\|FGF4	By sequencing	Max Rothschild (Fan)	119 / 30
LS259	ss86352335	Genomic	GAAGTATGGCCAAGTCCCTATGGTAAGGCT TCGAGGTCACCCCGCTTCATGTTTTTCCAA	G/A	ATGAAATACACCAACTTGAGTTTTACACAC AGCCTTCTCCCCAGGATGTGGCKAATAATT		Large White, Landrace		\|\|CART	By sequencing	Max Rothschild (Fan)	119 / 30
LS260	ss86352336	Genomic	TTTCCAARATGAAATACACCAACTTGAGTT TTACACACAGCCTTCTCCCCAGGATGTGGC	G/T	AATAATTCATACAATGGGTTTGCAGAATTC TGTGGGCTCCCCTTTATTTCCATGGCCGGC	0.2689	Large White, Landrace	2	CART\|Cocaine and amphetamine regulated transcript\|CART	By sequencing	Max Rothschild (Fan)	119 / 70
LS261	ss86352337	Genomic	CCTTGCCCCTTGGTCTCTAAGGTTAAAGAC CAGGTTGGGCTGTTTTGGAGGATGGGACAG	A/G	TTGYGCCAGGAATCAGCTCTTGGGTCTGTG TGAAAAGGAGTATTTCCTGAGAATGTGCTT		Large White, Landrace		\|\|CART	By sequencing	Max Rothschild (Fan)	119 / 30
LS262	ss86352338	Genomic	GCCCCTTGGTCTCTAAGGTTAAAGACCAGG TTGGGCTGTTTTGGAGGATGGGACAGRTTG	C/T	GCCAGGAATCAGCTCTTGGGTCTGTGTGAA AAGGAGTATTTCCTGAGAATGTGCTTTTAA		Large White, Landrace		\|\|CART	By sequencing	Max Rothschild (Fan)	119 / 30
LS266	ss86352342	Genomic	CAGGTCCTTGGAGGAGAGCTGCTCCTCCGG GTTGTGGCTGGGGTTGTAGCAGTATTCCAG	G/C	CCAGGYGGCCTCCGGGCCTGCAGGTACTCA CGGAGGTTGCCCTTGGAGGCATACTCCACA	0.0913	Large White, Landrace	14	FGFR1\|Fibroblast growth factor receptor 1\|FGFR1	By sequencing	Max Rothschild (Fan)	119 / 70
LS268	ss86352344	Genomic	GATGCTCTTGGCCAGCTTGTGCACGGCCAT CTGGCTGTGGAAGTCACTCTTCTTGGTGCC	A/G	CTCTTCATCTTGTAGATGATGACAGACCCC ACCATGCAGGAGATGAGGAAGGCCCCTGNT	0.0936	Large White, Landrace	14	\|\|FGFR1	By sequencing	Max Rothschild (Fan)	119 / 70
LS270	ss86352346	Genomic	GGACTCGTAATACACCCAGTCGAAGCCGGC CTCCACCGCCAGGCGCGCCAGCAGTCCGTA	G/A	TACTTGTTTCCGGTCGCGATCCGACGTGGT GATGTCCACCGCKCGGCCTTCATAATGCAG		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	119 / 30
LS271	ss86352347	Genomic	CGCGCCAGCAGTCCGTARTACTTGTTTCCG GTCGCGATCCGACGTGGTGATGTCCACCGC	G/T	CGGCCTTCATAATGCAGCGATTCCTCCGAG TGGTGACCGTCCTCGTCCCAGCCCTCGGTC		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	119 / 30
LS277	ss86352353	Genomic	CGGGCCGGCTGCAGGCCTGGCACTCCAGCC ACCAGCACATACTGGCCAGGCTGCACCTGG	C/A	TGGCAAACGTGGCCCGGAAGCGGGCAGCTG GTTCTGTGTGATTGTTGGCTGTGAAGAGCA		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	119 / 30
LS280	ss86352356	Genomic	GAGAATAAAGGAGATTGTGAAGAAACACTC TCAGTTTATTGGCTACCCCATTACTCTCTT	C/T	GTGAGTATTTGTGCATTTTGTTWGTAGACA GCCAAGTAAGTGAATTGAAATCCTTGCTTT		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	119 / 30
LS188	ss86352265	Genomic	GGTTTAGGTAGGCTCATGGGTGGCCAACAA AGTTATAAATTGCAATAAGGAAAGCAGCAA	C/T	GATAAACTTTGATTTTCAAAATCCCATCAA GGTGATTAYAAAGTCTAGGCATCCAGGCAC		Large White, Landrace		\|\|FBN1	By sequencing	Max Rothschild (Fan)	118 / 30
LS189	ss86352266	Genomic	TTGCAATAAGGAAAGCAGCAAYGATAAACT TTGATTTTCAAAATCCCATCAAGGTGATTA	C/T	AAAGTCTAGGCATCCAGGCACAACATATGT AATGATGTGAAACCCTRATCACAGTATCCT		Large White, Landrace		\|\|FBN1	By sequencing	Max Rothschild (Fan)	118 / 30
LS190	ss86352267	Genomic	ATCAAGGTGATTAYAAAGTCTAGGCATCCA GGCACAACATATGTAATGATGTGAAACCCT	A/G	ATCACAGTATCCTTTGGTTCCATTCCCTCT ATCTCAGAAATATTCTAAAAGAAGTCACTG		Large White, Landrace		\|\|FBN1	By sequencing	Max Rothschild (Fan)	118 / 30
LS210	ss86352287	Genomic	TGTTCCAAGTTCCTCTAAACTTCTGGCGTC GGGACACTTGTGATGGACGAGTGGTGAGGG	C/T	GTGGGTGAACTGTGAGGCTTGCRTCCCCAC TAACTGCCTCTCCYGTGCCTTTGACTGCTT		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	118 / 30
LS211	ss86352288	Genomic	TGGCGTCGGGACACTTGTGATGGACGAGTG GTGAGGGYGTGGGTGAACTGTGAGGCTTGC	A/G	TCCCCACTAACTGCCTCTCCYGTGCCTTTG ACTGCTTCCCGTCTAGGGCAGAGCATCAAC		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	118 / 30
LS212	ss86352289	Genomic	GGACGAGTGGTGAGGGYGTGGGTGAACTGT GAGGCTTGCRTCCCCACTAACTGCCTCTCC	C/T	GTGCCTTTGACTGCTTCCCGTCTAGGGCAG AGCATCAACCCCAAGTTGGCGGGCCTGATT		Large White, Landrace		\|\|BMP7	By sequencing	Max Rothschild (Fan)	118 / 30
LS225	ss86352302	Genomic	TCATCTATCCAGATTTGATGCCCCAACGCC CAGGTCATCCAACTCAGAGGACGAGCTCCC	T/G	GAAGACTACCCAGTGGTCAAAAATATGCTT CACAGACTRACAGGTAAGGAGGGCAGAAAG		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	118 / 30
LS229	ss86352306	Genomic	AGCAACCCCCGCCCWCTTATGTTGCCTCTC TTCTCCCAAACAGTTAGGAGGACCTCGACC	C/T	GCCTCCCATTTTACACCCAAAGCCGAATCC ACCCCARCCCTCTCCTTAGGATGCCTCTCC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	118 / 30
LS230	ss86352307	Genomic	AAACAGTTAGGAGGACCTCGACCKGCCTCC CATTTTACACCCAAAGCCGAATCCACCCCA	A/G	CCCTCTCCTTAGGATGCCTCTCCCTGAAGG CTACCCCAGTACCTCCCGACGGATCCCCCG		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	118 / 30
LS241	ss86352317	Genomic	ATACGGCAAAGGCAGCAGTAGGAAAGGTCC GGGACCTTCTGACAGGAGTCAAGTGACCTC	G/A	AGTGAAAAACAAAGCTTTCCCAGTAAGGGC AAAGGTCAGGGTCAGCTCACTCCTTCTCGC		Large White, Landrace		\|\|MEPE	By sequencing	Max Rothschild (Fan)	118 / 30
LS245	ss86352321	Genomic	TTTTACAATCTCGTATTGTACTCCATATTT AGAACAATTCCATGTTCCCGTGCTAATATA	C/A	GACAAAAATGTCCCAATGTTTCTCTCGTAT TTTCAATTCTATTTTTCACATTTGACTCTA		Large White, Landrace		\|\|BSPii	By sequencing	Max Rothschild (Fan)	118 / 30
LS258	ss86352334	Genomic	CCCCAGAGATGGGGGTCCCGGGGGCGCGCA GGCAGAGGGGGGAGCCAGGTCGCCGCCAGG	C/T	GGGGGAGGCGTGGCCCCAGGGTCCGGTGCC CGGGAATGACCTGCACCCCGCCCCCAGGCC		Large White, Landrace		\|\|FGF4	By sequencing	Max Rothschild (Fan)	118 / 30
LS275	ss86352351	Genomic	CAGGGGCCAGAAGGCCAATTGAGCCARATG ATGGTCAGCCACGGCCGCGAAGCATGAGGC	C/T	ACCACATCCTCCACCACCAGMGTCCCATGC CTCGTTAAGGGAGCGTATGCCCCAAGGGCC		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	118 / 30
LS276	ss86352352	Genomic	AGCCARATGATGGTCAGCCACGGCCGCGAA GCATGAGGCYACCACATCCTCCACCACCAG	A/C	GTCCCATGCCTCGTTAAGGGAGCGTATGCC CCAAGGGCCACGTGTGTGGAAACCGCTGCC		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	118 / 30
LS278	ss86352354	Genomic	TGGTTCTGTGTGATTGTTGGCTGTGAAGAG CAGGTGGGCAGGGGTGAGGGCCAGGCGGCG	C/T	GGGGGGTCTTGGGTCTCGATGACCTGAAAG GCCCTCAGCCTGTCTGGCTCACGATCGAGG		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	118 / 30
LS281	ss86352357	Genomic	AACACTCTCAGTTTATTGGCTACCCCATTA CTCTCTTYGTGAGTATTTGTGCATTTTGTT	T/A	GTAGACAGCCAAGTAAGTGAATTGAAATCC TTGCTTTTTAGGAAGAGATCCAAACTTGAG	0.2988	Large White, Landrace	7	HSP90\|90-kDa heat shock protein\|HSP90	By sequencing	Max Rothschild (Fan)	118 / 70
LS186	ss86352263	Genomic	CATTATTTTAAAAAATCCATTGAGGCCYTC AWATTGTAGTTTTGTGGTGTGTAGGTTCAG	C/T	AGCTAATTGTATAGAAAAGAACAGTGTATT TTTAGAAGAGATTATATTTAGGAGATTTCT		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	117 / 30
LS228	ss86352305	Genomic	ACTCGTTCCAGGGGTCAAGTCCACGCCCCT TGTGGGAGAACTGATAAGCAACCCCCGCCC	A/T	CTTATGTTGCCTCTCTTCTCCCAAACAGTT AGGAGGACCTCGACCKGCCTCCCATTTTAC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	117 / 30
LS244	ss86352320	Genomic	CKCTCGCTGCCCTCCAGCCTTCCCAAGAAG GTAGCAGCTTCCTCCAAAAGGCTAAATCTG	A/G	TCTCAGTTTGTCTTGCGTTCTTTTACAATC TCGTATTGTACTCCATATTTAGAACAATTC		Large White, Landrace		\|\|BSPii	By sequencing	Max Rothschild (Fan)	117 / 30
LS274	ss86352350	Genomic	AGCGTGCCCCACGCCAAGCGTGATGAAACA GTCGCAGGGGCCAGAAGGCCAATTGAGCCA	A/G	ATGATGGTCAGCCACGGCCGCGAAGCATGA GGCYACCACATCCTCCACCACCAGMGTCCC		Large White, Landrace		\|\|IHH	By sequencing	Max Rothschild (Fan)	117 / 30
LS182	ss86352259	Genomic	CATAGTGCTAAATTGGTAATTGGAAAATCT GACTTCTTTCCATCTCTTTTCYCTAATTGG	A/C	TACATGAACTTGAGAAGTCACATCATYTGT ATAAATTTTCAATTCACAACCATTATTTTA		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	116 / 30
LS183	ss86352260	Genomic	TCTGACTTCTTTCCATCTCTTTTCYCTAAT TGGMTACATGAACTTGAGAAGTCACATCAT	C/T	TGTATAAATTTTCAATTCACAACCATTATT TTAAAAAATCCATTGAGGCCYTCAWATTGT		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	115 / 30
LS184	ss86352261	Genomic	TCACATCATYTGTATAAATTTTCAATTCAC AACCATTATTTTAAAAAATCCATTGAGGCC	C/T	TCAWATTGTAGTTTTGTGGTGTGTAGGTTC AGYAGCTAATTGTATAGAAAAGAACAGTGT		Large White, Landrace		\|\|TRAF6	By sequencing	Max Rothschild (Fan)	115 / 30
LS185	ss86352262	Genomic	ATCATYTGTATAAATTTTCAATTCACAACC ATTATTTTAAAAAATCCATTGAGGCCYTCA	A/T	ATTGTAGTTTTGTGGTGTGTAGGTTCAGYA GCTAATTGTATAGAAAAGAACAGTGTATTT	0.2269	Large White, Landrace	2	TRAF6\|TNF receptor associated factor 6\|TRAF6	By sequencing	Max Rothschild (Fan)	115 / 70
LS267	ss86352343	Genomic	CTTGGAGGAGAGCTGCTCCTCCGGGTTGTG GCTGGGGTTGTAGCAGTATTCCAGSCCAGG	C/T	GGCCTCCGGGCCTGCAGGTACTCACGGAGG TTGCCCTTGGAGGCATACTCCACA		Large White, Landrace		\|\|FGFR1	By sequencing	Max Rothschild (Fan)	113 / 30
LS251	ss86352327	Genomic	ACCAGGTCACTGAGATCCATCCACTCACAC CTTAAACATTCATGCTGGCAAAAATTTATG	G/A	TGAATGAACGTGGCTTTAAGCGGCATATAA TATACATATCTGACTTCCCAAAAGCTCCAG	0.4415	Large White, Landrace	8	FGF2\|Fibroblast growth factor 2\|FGF2	By sequencing	Max Rothschild (Fan)	108 / 70
LS273	ss86352349	Genomic	CCAGCTGCTCTACCGCCTTGGGGAGGGTGT GCACTGGTACCCCCAGCTGCTCTACCGCCT	G/A	GGGCGACTCTTGCTGGAAGAGGGCAGCTTC CACTCACNTGGGGCATGA	0.4049	Large White, Landrace	15	IHH\|Indian hedgehog\|IHH	By sequencing	Max Rothschild (Fan)	107 / 70
LS234	ss86352311	Genomic	GACACCTGGGCTGGCAGAGACACCAATGCT TAGGAAGGAAGGGGTAAGAGTACAGCACAG	A/G	GGACAAACCCCCATCTCTTTGCTCCCTCCC		Large White, Landrace		\|\|LIRF	By sequencing	Max Rothschild (Fan)	89 / 30
LS240	ss86352514	Genomic	CAGCAGTGAATGGAGCTGAAAGTA	C/T	GAATTATAATGRAATTCCCAAATACGGCAA AGGCAGCAGTAGGAAAGGTCCGGGACCTTC		Large White, Landrace		\|\|MEPE	By sequencing	Max Rothschild (Fan)	82 / 30

100 Rows queried.

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