SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP, Martien Groenen, Max Rothschild, Miguel Perez, Kwan-suk Kim, Gary Rohrer groups
Scores: [ Quality Score / Info. Score ]
(a) Sequence quality score: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
(b) Information score: Range: 10-70. The presence of (1) minor allele frquency (MAF), (2) chromosome location, (3) annotation, each add 20 to the total "info score".
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu (about the compilation of this data set).
Date: July 31, 2008

Records 9301 - 9400:

Custom Name	dbSNP id	Molecule	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	MAF	MAF Species	Chromosome	Annotation	Reference	Source	Scores (seq.qual/info)
LS283	ss86352359	Genomic	AGTTCCTTTTAGCTTACTAGTTTTTTAATT TTGGGGGGGAAAAAGGTGATGATTTTGTGT	T/G	TTCTTTTTAAGGTGGAGAAGGAACGTGATA AAGAAGTCAGTGACGACGAGGCGGAAGAAA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	120 / 30
LS284	ss86352360	Genomic	AGAAAAGGAAGACAAAGAGGAAGAAAAGGA GAAAGAAGAGAAGGAATCTGAGGATAAACC	G/A	GAGATAGAAGATGTTGGTTCTGATGAAGAG GAAGAAGAAAAGAAGGATGGTGACAAGAAG		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	120 / 30
LS305	ss86352378	Genomic	GGCATATCCCGGCGGTGATAAGTTCAGCAC AACTTTCCTGTCGGCCGCCGCCAAGGGGCA	A/G	GGATTCGGGGACGCCAAGAACCGGGCCCGC TACGGCGCGGGGCAGCAGGACCTGGCGGCA	0.2199	Large White, Landrace	2	ALX4\|Aristaless-like homeobox 4\|ALX4	By sequencing	Max Rothschild (Fan)	120 / 70
LS311	ss86352384	Genomic	GACCGAGGGCTGGGACGAGGACGGTCACCA CTCGGAGGAATCGCTGCATTATGAAGGCCG	A/C	GCGGTGGACATCACCACGTCGGATCGCGAC CGGAACAAGTACGGACTGCTGGCGCGCCTG		Large White, Landrace		\|\|SHH	By sequencing	Max Rothschild (Fan)	120 / 30
LS312	ss86352385	Genomic	ACTATCAGGCACGGGTTGAGCAGGTGGTCA GGAGCAGCAGCGGGGAGCGCCGCCGCCGAC	A/G	TCCTCTTCCCCGGGATCCCCGCCTCCATCC CCCGGCGGGCCTCTTCACCTTCTTGGCTCC		Large White, Landrace		\|\|SHH	By sequencing	Max Rothschild (Fan)	120 / 30
LS314	ss86352387	Genomic	CGGGTTCAATCCTTGGTCTCACTTAGTAGG TTAAGGATCCAGCATTGCTGTGGCTGTGGT	G/A	TAGGCTGGCAGCTGTAGCTCTGATTCGACC CCTATCCTTAGAACTTCCATATGCTGCAGG		Large White, Landrace		\|\|PPARG	By sequencing	Max Rothschild (Fan)	120 / 30
LS315	ss86352388	Genomic	CTTCCATATGCTGCAGGTACAGCCCTGAAA AGACACAAAAAAGAAGCAAGTGGATGTTGA	G/A	CAGTCTCTTTGAGAGTTCTGAACACTGCAC TGCTTGTGCCCCTCACAAGACACTGAACAT	0.1515	Large White, Landrace	13	PPARGP\|Peroxisome proliferator-activated receptor gamma\|PPARG	By sequencing	Max Rothschild (Fan)	120 / 70
LS322	ss86352395	Genomic	TCCTTCTCGCGGTCTTGATAACAACATCAA AAATGAAATGGGTTCCCATAGCGACCCCAA	C/T	AATGAGGGGACCATAATAACACATGGCAGA AAAAATCACGATGTACACTACAGACAAAAT	0.3441	Large White, Landrace	8	\|\|MEPE	By sequencing	Max Rothschild (Fan)	120 / 70
LS330	ss86352403	Genomic	ACCTAACTGCCTAAGCCTCTGTAATCTCAC TTTCAAATGCAGTAACCTTATCAGATGAGA	G/C	TAAGCATAATAAATAGTAGAGAAGTTTTGA ACCAAATTTCTTGATTGTTACTTTCAATTT		Large White, Landrace		\|\|CALM1	By sequencing	Max Rothschild (Fan)	120 / 30
LS331	ss86352404	Genomic	CAGGATGGCCTTCCAGGAGCTTCTGTGCCT GCACAGGTCTTCCCTGAAGGCCTATGGGAA	T/C	GGCTGCTCCAGCAACAGCAACGGTAGGACT GACTACACAGGGGAACAGAGTGGCTGTTAC		Large White, Landrace		\|\|B2AR	By sequencing	Max Rothschild (Fan)	120 / 30
LS334	ss86352407	Genomic	GAGGTCAAGCAGTCTTTGCCCAGCAAAGCA AGCCTGTCTTCAGCAGCATCATTTGAAAAG	C/T	CGCCGGGCGGTGCTGGGGCCTAGGGCAGTC CCAGCTCGGCGGTGGGCTGCCTTCCGTGGT		Large White, Landrace		\|\|IGF2R	By sequencing	Max Rothschild (Fan)	120 / 30
LS336	ss86352408	Genomic	CGCTTGGACCTGCTGGGACGGTGCTGGTCC GGTTCTGAGCCCTGGATAGAAACACGTTTC	C/T	TCCCAAAGACATCTCTCAGCTTAGCTTTGT TGAGCTTTTAACACCAGCGCTTTCAGCAGA		Large White, Landrace		\|\|IGFBP1	By sequencing	Max Rothschild (Fan)	120 / 30
LS340	ss86352412	Genomic	CGGAATACGTGAGAGCGTTTCCTCTTCCTA ATGGTGGGGTGGGGTGCACCTGGCCTGGGC	A/G	CCCCGAGATCATGGGGTCACTCTTGACTCA AGAGCCCCTAGGAGTGCCCACCATGGCTCA		Large White, Landrace		\|\|IGFBP3	By sequencing	Max Rothschild (Fan)	120 / 30
LS341	ss86352413	Genomic	CATCTCCTTCTGCATCCGCACCTGCAGCCT CTGCCACCACTCCAGCTTTGACCTTGCCCC	A/C	GAGTCTAAATGAGCATGCGTGGCAGTACTT AATATACCTGGGGCGGGGGAGGGGGGCGGC	0.1203	Large White, Landrace	15	IFGBP5\|Insulin like growth factor binding protein 5\|IGFBP5	By sequencing	Max Rothschild (Fan)	120 / 70
LS342	ss86352414	Genomic	AGAGATGGGCAAGCTGGCAGCGGGGCCTGG AGCACTGCCAGGTGCCCATCCTGCCTGCCC	A/G	GCAGGCCATAGAGCTGTGGCTCCTCTTTCA CAGGAAACTTGAAACACAAGAACAGCTGGG		Large White, Landrace		\|\|IGFBP7	By sequencing	Max Rothschild (Fan)	120 / 30
LS343	ss86352415	Genomic	GAGTTCCCCAAGAACTCACACACACCGTAG ACTAATTTAGTCTTCCGAAGGTCAGACATG	C/G	CCAGGTAGGTACAGCCCTCTCCTCTCAGCT CGGACCCAGACCACCAGGTCACCATGCACA	0.354	Large White, Landrace	2	SLC22A5\|Solute carrier family 22, member 5\|SLC22A5	By sequencing	Max Rothschild (Fan)	120 / 70
LS344	ss86352416	Genomic	CTCCATCACTGTACCCCAAGACCCAGCCGT CCTCCGACAGAGCATCTTGGACATGACTGC	A/G	GTTCTTCTTGCCTGTGGCATAAACCCAGAG AAGAGCATCCTTTTCCAACAATCTCAGGTG	0.354	Large White, Landrace	4	WARS2\|Tryptophanyl tRNA synthetase 2\|WARS2	By sequencing	Max Rothschild (Fan)	120 / 70
LS346	ss86352418	Genomic	CAGTACCCACCTCATACGGTTAGTGAAAGG CCTGCAGAGATCCCCGCTGGCTCCGCAGGT	C/T	AAGGATCCGGCGCTGTCACTGCTGTGGCAT GGGTTCGGTCCCTGGCCCAGAGTTTCTGCG		Large White, Landrace		\|\|WARS2	By sequencing	Max Rothschild (Fan)	120 / 30
LS347	ss86352419	Genomic	AGGACACCTTTGCGCTGGCAGCTCCAAGAG GATGGAGGCCCGTAGGGGTAGGGAGGGGGA	G/T	ACACCCAACTTACCTGGCAGGCATCATAGC TCTCGTTCTGGTAACCAGCACACAGCATAT		Large White, Landrace		\|\|UNQ9391	By sequencing	Max Rothschild (Fan)	120 / 30
LS349	ss86352421	Genomic	TCCTCCAAACAGAGGGTCACCGGTTTGGAC TTCATCCCTGGGCTCCATCCTGTCCTGAGT	C/T	TGTCCAAGATGGACCAGACCCTGGCGATCT ACCAACAGATCCTCACCAGTCTGCCTTCCA		Large White, Landrace		\|\|LEPTIN	By sequencing	Max Rothschild (Fan)	120 / 30
LS350	ss86352422	Genomic	GACTCTGCTCTGTTGGCAGCAGGTGATTAG ACCAGAGGTGAGCACCTGACTGGAGCTGGG	C/T	CAATCAGGTAGATGTCCCTGAGGATTTATG ACTCTGATAGAGGCAGTATAAATTCCAAAT	0.3709	Large White, Landrace	18	WNT2\|Wingless-type MMTV integration site family member 2\|Wnt2	By sequencing	Max Rothschild (Fan)	120 / 70
LS351	ss86352423	Genomic	CCCAGAGGCCGGGGAGAAGAGGCGAGTACC CTAGGGCTGGTGACCTAATTTTCGGGTAAA	C/T	ATCTGGGATTGAGGAAGAGAGCAGGGCGGC GGCTTACGCTAGGGGCGGCTGTGTCTTACA	0.354	Large White, Landrace	18	WNT16\|Wingless-type MMTV integration site family, member 16\|Wnt16	By sequencing	Max Rothschild (Fan)	120 / 70
LS352	ss86352424	Genomic	TCTAAGCCAACAACAAGACCTACACCAAAG CCAATGCCACAGCCTACCCCTCCCCCACCC	T/C	CACCCCCACCCACAGAACTCAGAACCCCTC CACCAGCAACAACTCCAGAAAGACCAACCA		Large White, Landrace		\|\|NN	By sequencing	Max Rothschild (Fan)	120 / 30
LS353	ss86352425	Genomic	CTCCAGCACCTCCAGCTCCCAAGAGATGTT GTAATGCCTGAAGGCCTCGGCCAGCTGCCC	A/G	TGCTGGAAGTCGATCTGCTGGCGGCTCACC GTGGGGTTCTCGTGGTCGTCATCGTGGAGG	0.213	Large White, Landrace	1	PAPPA\|Pregnancy-associated plasma protein A\|PAPPA	By sequencing	Max Rothschild (Fan)	120 / 70
LS354	ss86352426	Genomic	AGAGACCCCGCAACCTGGCGCTGGCCCGCA CACAGCTGGCCTGGATCAAGAAGCAGCTGG	C/A	GGCAGCCAAGGAGGACTATGTGCTGGTGGC CGGCCACTATCCTGTGTGGTCCATCGCCGA		Large White, Landrace		\|\|TRAP	By sequencing	Max Rothschild (Fan)	120 / 30
LS356	ss86352428	Genomic	TCTCTTTTTCTCTACCATAAATGATATTTT TCTTAAAAGGGAAAACTTAAGAGAAACACA	A/G	TGAAATATAATAATAGCATTTTAATCTTTG TTCTCTTGTTATCTAGGGAGTCAAAATGTG		Large White, Landrace		\|\|Calbindin	By sequencing	Max Rothschild (Fan)	120 / 30
LS368	ss86352440	Genomic	TCAGCCAGAGAGAGTCAGCAGTCCTCCTGC TGTCCCCGGCTCTGCCCCCAAACCCTTCAG	A/G	GACCGCTGGCCCAGAGTCTATTACTCCCAG GTCCCCCTCACCCCACCAGGAGTCCTCCCC		Large White, Landrace		\|\|VIPR1	By sequencing	Max Rothschild (Fan)	120 / 30
LS377	ss86352449	Genomic	TGAACTTCGGCCAGGTGGGTGAGGGCAGGG CGAGCTCTGTGGGCGGGAATCACAGGGAAC	A/G	ACCTTAACTGCCTTTGAGGGCCCCCGGGGA GGTGGGGCACCCCTCTTCCTCCTCCAGACA		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	120 / 30
LS378	ss86352450	Genomic	TTCCTCCTCCAGACAGACAGGCAGGGGCGG AGAAAGGCCGGGCAGCCTCAGCGCCAGGAA	C/T	CTAATCCGAGTTCCCCCGCGCTGGCCTGGG GGAAGGGGCGGGGCCGCTGGAGCGGGAGGA		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	120 / 30
LS379	ss86352451	Genomic	GTGTGCTTCATGTCTCACTTTAATTTGTAT CTCATCCTGATCATGTGTAATTCCATCATC	A/G	ATCCCCTGATTTATGCACTCCGGAGCCAAG AACTGAGGAAAACCTTCAAAGAGATCATCT	0.4605	Large White, Landrace	1	MC4R\|Melanocortin 4 receptor\|MC4R	By sequencing	Max Rothschild (Fan)	120 / 70
LS401	ss86352453	Genomic	TGCCCCTGAACTTCCAAGCACTTTCTTCTG TTGGAGGGAACCTGGTGTCTCAGAACTCCT	C/T	GCTGTGCTTCAAGCTCCCCCTCAGAATGCC CTCCTCTGAGAACCAGGTTTAGGGTTCCAG		Large White, Landrace		\|\|ADAMTS2	By sequencing	Max Rothschild (Fan)	120 / 30
LS402	ss86352454	Genomic	CCCCCGGCCTGGTACCCTAGCAGCCACGGC CTCCTTTTTTTTCCTTCTAGGAAACATCTC	C/T	GACCCCTCCAAGAAGAGCTACCTGTTTCAG TGGCTGTCCCGACCGGACCCCGACTCGCCA	0.139	Large White, Landrace	2	ADAMTS2\|ADAM metallopeptidase with thrombospondin type 1 motif, 2\|ADAMTS2	By sequencing	Max Rothschild (Fan)	120 / 70
LS403	ss86352455	Genomic	GTAAAATGCTGAGAGTTGCTTCTGCCTCCT ACATTTTCATATATATTTCTTTCTTTTGAA	A/G	GTGTGAAATCCATGGTAACCAGGCTTTTAT CTAATTAGGGGAAATAAAAATCTGAAAACA	0.2412	Large White, Landrace	2	APIP\|APAF1 interacting protein\|APIP	By sequencing	Max Rothschild (Fan)	120 / 70
LS282	ss86352358	Genomic	AAATCCTTGCTTTTTAGGAAGAGATCCAAA CTTGAGTATTGACTCAAGACTAGTGAAGCG	G/C	TCTCTCTTACTGTGTTGGGGTATCTAGGGT TATTTATGTGGCTTTATGAGGAATTGACCA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	119 / 30
LS307	ss86352380	Genomic	CTGGCCTGGGCCCGGGGCCTGACCCTCAGC ACTTTCAGCCGCCCCAAGTCTGAGGCCCCA	A/T	GGACTGCTGGGAGGGAGGGGGCAGCGGGCA CCAAGGCCGAGCCCCCCCCACCCCCCGCTC		Large White, Landrace		\|\|AlX4	By sequencing	Max Rothschild (Fan)	119 / 30
LS320	ss86352393	Genomic	GCGAGAAGGAGTGAGCTGACCCTGACCTTT GCCCTTACTGGGAAAGCTTTGTTTTTCACT	C/T	GAGGTCACTTGACTCCTGTCAGAAGGTCCC GGACCTTTCCTACTGCTGCCTTTGCCRTAT		Large White, Landrace		\|\|MEPE	By sequencing	Max Rothschild (Fan)	119 / 30
LS327	ss86352400	Genomic	CTCGCGTGGTGGTCACGATGCCCACAGATT TCCCTGGGGGGCGGGAGGAGGGGTCAGCTT	G/T	GAGGGGAGATGGGGGTGTCCATGCGTCCCC CTCCCTCTCCTAGCTAAAGATGGTCACTGT		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	119 / 30
LS328	ss86352401	Genomic	GAGTCCTCCCCTCCATCAAGGACCCTGTAG CACCTGACTCCTACAGGGAGCCACCCCCCA	G/A	CCCCCTSGTCCCGCTGCCCTGTGAGAACTC CGCAGCCCCCACTAAGGGCTCTCAGGGTGG		Large White, Landrace		\|\|"ALP, Exon 5,6 and intron 5"	By sequencing	Max Rothschild (Fan)	119 / 30
LS329	ss86352402	Genomic	CCCCTCCATCAAGGACCCTGTAGCACCTGA CTCCTACAGGGAGCCACCCCCCARCCCCCT	C/G	GTCCCGCTGCCCTGTGAGAACTCCGCAGCC CCCACTAAGGGCTCTCAGGGTGGAGCGTGG		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	119 / 30
LS345	ss86352417	Genomic	GTCCTCCGAAGCAATGCACGTGGGTCACCT CATCCCGTTCATCTTCACCAAGTAAGTGTC	C/T	GCTCGTGYGACGGTTCTCACTGGTATTCGT GACTCAGAGAGCCCGTCAGTCCTGTTACTG	0.4199	Large White, Landrace	7	WARS\|Tryptophanyl-tRNA synthetase\|WARS1	By sequencing	Max Rothschild (Fan)	119 / 70
LS348	ss86352420	Genomic	GAAAGCCCATTAGAAAAGTCACTGAACAGC AACCCCAGTGCCAATAATGCAACTGTRTGT	G/T	CCCTAGGCCACCTGGCCCATACCTGAGTCC CATGCTTGTGTCCCGCCAGCCACTCATCCA		Large White, Landrace		\|\|UNQ9391	By sequencing	Max Rothschild (Fan)	119 / 30
LS357	ss86352429	Genomic	CTACAGGAGTCTCACAAGAAACTTCTGAAA ATTCTGCTAATAAAACAATAGTTCCTGCAA	C/G	GCTACCACAGCTCACCCCCACCCTGGTGTC ACTGCTGGAAGTCATTGAACCYGAGGTGTT		Large White, Landrace		\|\|GR	By sequencing	Max Rothschild (Fan)	119 / 30
LS358	ss86352430	Genomic	TCCTGCAASGCTACCACAGCTCACCCCCAC CCTGGTGTCACTGCTGGAAGTCATTGAACC	C/T	GAGGTGTTGTATGCAGGATATGACAGCTCG ATTCCAGATTCCACCTGGCGGATCATGACC		Large White, Landrace		\|\|GR	By sequencing	Max Rothschild (Fan)	119 / 30
LS360	ss86352432	Genomic	GAAGGAAGCCATGGGCCTCACAGGTCCAGC CACAGGGCTTCTGGTCCACATGCTCTCGGA	T/G	GASCACTGAGGTTTCCCAGATGTGCCCTCT GGACCAGGCCACTCAGCAGTGAACTCTGGC		Large White, Landrace		\|\|GGT	By sequencing	Max Rothschild (Fan)	119 / 30
LS361	ss86352433	Genomic	GGAAGCCATGGGCCTCACAGGTCCAGCCAC AGGGCTTCTGGTCCACATGCTCTCGGAKGA	C/G	CACTGAGGTTTCCCAGATGTGCCCTCTGGA CCAGGCCACTCAGCAGTGAACTCTGGCCAA	0.4085	Large White, Landrace	14	GGT1\|Gamma glutamyl transferase 1\|GGT	By sequencing	Max Rothschild (Fan)	119 / 70
LS366	ss86352438	Genomic	TGTAATAAGCATTTATTAAGCACCTACTGT GTGTTTAGCCTTTTGCTTCACCAGAGGAAC	G/A	TRGGGGTGGGGCAGGGCTGGGGGCTCCCAA GTTCTGCCTGCCTTACCTCTCCTGCTCCCT		Large White, Landrace		\|\|VIPR1	By sequencing	Max Rothschild (Fan)	119 / 30
LS367	ss86352439	Genomic	TAATAAGCATTTATTAAGCACCTACTGTGT GTTTAGCCTTTTGCTTCACCAGAGGAACRT	G/A	GGGGTGGGGCAGGGCTGGGGGCTCCCAAGT TCTGCCTGCCTTACCTCTCCTGCTCCCTTC		Large White, Landrace		\|\|VIPR1	By sequencing	Max Rothschild (Fan)	119 / 30
LS369	ss86352441	Genomic	GGGCCGTCCCTTGAAATCGTCGCCCTGCCG CACCAGGGCCTGCCGGATGGTGTCCAGGCC	G/A	CTGAGCACCAGCACAGGGGTGCAGCCAATG CGGATCTGCAGCACATCTCCATAGCGCTGG		Large White, Landrace		\|\|CYP1A1	By sequencing	Max Rothschild (Fan)	119 / 30
LS370	ss86352442	Genomic	GGTGCAGCCAATGCGGATCTGCAGCACATC TCCATAGCGCTGGCTCAGCCTCGCCAGGGC	C/T	AGGTGTGGGCTCTTGCCCAAGGTCAGCACG TGCCCGAGCAGCGGCCAGCCCCAGGGCCCT		Large White, Landrace		\|\|CYP1A1	By sequencing	Max Rothschild (Fan)	119 / 30
LS371	ss86352443	Genomic	CTTCCCAAATTGTTTGAGGGTGTCTTGGCC ATAGCCTGGACCCTTAATGCACAATCACAG	T/G	GAGCCTGTATCTGAGCAGAATTACAACCTG GAGGACTCCAGACACCAGATGTAGCTATGT	0.4805	Large White, Landrace	14	ALOX5\|Arachidonate 5-lipoxygenase\|ALOX5	By sequencing	Max Rothschild (Fan)	119 / 70
LS400	ss86352452	Genomic	TCCCCAGAACTACATCACTGCTGAGGAGCT GCGGCGGGAACTCCCGGCNGAGCAGGCCGA	A/G	TACTGCATCCGCCGCATGGCGCCCTACAAA GGGGCCGGGGCTCCGGCTGGAGCCCTGGAC		Large White, Landrace		\|\|ACTN3	By sequencing	Max Rothschild (Fan)	119 / 30
LS285	ss86352361	Genomic	GCTCCTTTCGACTTATTTGAAAACAGAAAG AAGAAGAACAACATCAAGCTGTATGTTCGC	A/C	GAGTGTTCATCATGGACAACTGCGAGGAGC TCATCCCTGAGTATCTGAGTAAGTAGAGTT		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	118 / 30
LS296	ss86352372	Genomic	GAGTGCATTTGGCATGCTTTTCCAGATTTC ATTAGAGGCGTGGTGGACTCTsGAGGATCT	T/C	CCTCTGAACATTTCTCGTGAGATGTTGCAA CAAAGCAAAATTTTGAAAGTCATCAGGAAG		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	118 / 30
LS299	ss86352374	Genomic	CAGCGCACCCAGTTGCAACACCACTCAGGG CAACGAGGTCACATCCATCCTGCGCTGGGC	G/C	AAGGACGCAGGTGAGTGGGCGAGCGGCGGG GAACACGGMCCGGCTCTGTGACCCATCTGG		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	118 / 30
LS300	ss86352375	Genomic	CATCTGGGCCTCCACTGTTGTAACTGTGCA ATGGGCAGAGGGTAGAAAAAGATGCCCTCC	G/A	GGGCTCCTCCAGCCCYGATGTTCTGGGATT CGGTGGAACATTCACGGACTCCGTTCCATG		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	118 / 30
LS303	ss86352376	Genomic	TGAGCACCTCCAACCASCMGCTCTCCAGGA GCCGCACTTGGTCGTACAGGCTGAGCTCCA	T/C	GAAGCCTGGGGGAAGCGAGAGGCCGTGAGC ATACCCACCCTCCTCCGCCGCCCCCAGTTC	0.3042	Large White, Landrace	1	ESR2\|Estrogen receptor 2\|ESR2	By sequencing	Max Rothschild (Fan)	118 / 70
LS323	ss86352396	Genomic	GTCCCACAGCCCCAGATCCAGCTGCACGCG GTGGTCTGCACTGGAGTTCTGCAGGAAGGA	C/T	RTTAGAACATGAGCTAAGGCCCACCCTGGG GGGCTCTCTTYCTGCCAATAGCCCAGGCTC		Large White, Landrace		\|\|RAR?	By sequencing	Max Rothschild (Fan)	118 / 30
LS324	ss86352397	Genomic	TCCCACAGCCCCAGATCCAGCTGCACGCGG TGGTCTGCACTGGAGTTCTGCAGGAAGGAY	A/G	TTAGAACATGAGCTAAGGCCCACCCTGGGG GGCTCTCTTYCTGCCAATAGCCCAGGCTCT		Large White, Landrace		\|\|RAR?	By sequencing	Max Rothschild (Fan)	118 / 30
LS325	ss86352398	Genomic	TGGAGTTCTGCAGGAAGGAY RTTAGAACAT GAGCTAAGGCCCACCCTGGGGGGCTCTCTT	C/T	CTGCCAATAGCCCAGGCTCTCCCTCCTGCA TTCGGATGCCCTCCTTGTCATCAGCACCAG		Large White, Landrace		\|\|RAR?	By sequencing	Max Rothschild (Fan)	118 / 30
LS332	ss86352405	Genomic	CTCAACGTCTTCAAATAATCAAGGGTCAAG TGGAAACMGGAGAGGAAAGCAAATTGAGCG	A/G	AGGGGTAAAACTATTTTTTTTTTATCTTGT AGAGTTTTACACTGATTGTATCTCTGTCAT		Large White, Landrace		\|\|COX2	By sequencing	Max Rothschild (Fan)	118 / 30
LS338	ss86352410	Genomic	TCTTGGTCTCCACCTTGGTTGGGGTTATGG AAGGAATGGCGATTGGACCACAGGGTTGGG	A/T	AGAGAAACTCTAGAGGCAGCCTCTTGAATT TRGGATTTGCAAGTCGATCCCACTTTGACC		Large White, Landrace		\|\|IGFBP2	By sequencing	Max Rothschild (Fan)	118 / 30
LS339	ss86352411	Genomic	GGAATGGCGATTGGACCACAGGGTTGGGWA GAGAAACTCTAGAGGCAGCCTCTTGAATTT	A/G	GGATTTGCAAGTCGATCCCACTTTGACCCC TGAAAGCCATTGACACGGATGGAGGGGAGG	0.1444	Large White, Landrace	15	IGFBP2\|Insulin like growth factor binding protein 2\|IGFBP2	By sequencing	Max Rothschild (Fan)	118 / 70
Ls364	ss86352436	Genomic	GGCTCCACGGTGGCAGAGTACTTGACCCCG CCTCCCCCGGGGAGCATGTTGGAGTCTTGG	T/A	GGGCATGTGGTGTGGGAGGGGCCAGGCAAA GCAGGCACAGCTGGTGACCAGCCGGTCGGT		Large White, Landrace		\|\|GGT	By sequencing	Max Rothschild (Fan)	118 / 30
LS372	ss86352444	Genomic	AATTACAACCTGGAGGACTCCAGACACCAG ATGTAGCTATGTTTTCAGCCCAGAGTGGAG	A/G	TCTTTACTTGCAGCACCCCATCCCCACCCT CAGCTCGTCCCCTCTTGGGCCAATGCAGGT		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	118 / 30
LS373	ss86352445	Genomic	ACTTGCAGCACCCCATCCCCACCCTCAGCT CGTCCCCTCTTGGGCCAATGCAGGTGTAGA	C/G	AGTAATAAGGCCAAGAGGCCTGTGTTGATG GCCCACATGCCTCCCCGTCCATCTGTCACA	0.4449	Large White, Landrace	14	\|\|ALOX5	By sequencing	Max Rothschild (Fan)	118 / 70
LS375	ss86352447	Genomic	ACAGTTCTTATYCCCATTCTGCAGTTGAGG AATCTGGGGAATGAGGAAATCAAATGTCTT	A/G	CTCAGTAGSCCCTGATAATAAATGGCAGAG ACCAGAGTTCTGTGCTCCTTCTTGGTGGTT		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	118 / 30
LS376	ss86352448	Genomic	ATYCCCATTCTGCAGTTGAGGAATCTGGGG AATGAGGAAATCAAATGTCTTRCTCAGTAG	C/G	CCCTGATAATAAATGGCAGAGACCAGAGTT CTGTGCTCCTTCTTGGTGGTTGAATTATAG		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	118 / 30
LS404	ss86352456	Genomic	CTATGTGCCAGGCGCTGGGCAAATCCCCTT TACGGATGTTACCTCTTAGCATCATCACAA	C/T	GACCATTCCCCCCATTTAACGGTCAGGGAC ATGGAGACCCAGGGATGTTAAGTAACTTGT	0.1648	Large White, Landrace	2	\|\|APIP	By sequencing	Max Rothschild (Fan)	118 / 70
LS310	ss86352383	Genomic	GGAGAAGTGGTGCGAGAAGGCGGTCAAGAG TTTGGTCAAGAAGCTCAAGAAGACGGGGCA	A/G	CTGGACGAACTGGAGAAGGCCATCACCACG CAGAACGTCAACACCAAGTGCATCACC		Large White, Landrace		\|\|SMAD3	By sequencing	Max Rothschild (Fan)	117 / 30
LS316	ss86352389	Genomic	GGCCAAAGGTGCGTCTGGGCTCTGCCTCCG CCTGCCCCAGCTCCACCCCTCCTGGGGTCC	G/A	GGGCCCCACCAGGCACATCCGAGGGAGCAA YGTCAGGCTGGATGTGGGGTGCGGGGGGSG		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS317	ss86352390	Genomic	CTGCCCCAGCTCCACCCCTCCTGGGGTCCR GGGCCCCACCAGGCACATCCGAGGGAGCAA	C/T	GTCAGGCTGGATGTGGGGTGCGGGGGGSGT CCTGTGGGTGCCCACAGCAGCTGGCCATCC		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS318	ss86352391	Genomic	CRGGGCCCCACCAGGCACATCCGAGGGAGC AAYGTCAGGCTGGATGTGGGGTGCGGGGGG	G/C	GTCCTGTGGGTGCCCACAGCAGCTGGCCAT CCTCTCTYGCAGCCGGACACAGCCTGGAGC		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS319	ss86352392	Genomic	GCTGGATGTGGGGTGCGGGGGGSGTCCTGT GGGTGCCCACAGCAGCTGGCCATCCTCTCT	C/T	GCAGCCGGACACAGCCTGGAGCTGATCGAG CCCCTCATCAAGTTCCAGGTGGGGCTGAAG		Large White, Landrace		\|\|VDR	By sequencing	Max Rothschild (Fan)	117 / 30
LS326	ss86352399	Genomic	CGTTGTCTGAGTACCAGTCCCGGTCGGCAG AGTGGGCATAGGCGGCGCTGGGGGTGGC	G/A	TGGTTCACTCGCGTGGTGGTCACGATGCCC ACAGATTTCCCTGGGGGGCGGGAGGAGGGG		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	117 / 30
LS333	ss86352406	Genomic	GATATGCAGGGCCGACCGTGGGGCTTGAGC GTCCTCAGACCTTGGTATCAGCAGCCGGTC	C/T	TGGACCCARTGCCCCCCACCMCAGCCCCCG AATACCAAAGAATGACCAYAGAGCCTCCCC		Large White, Landrace		\|\|CPT1A_1	By sequencing	Max Rothschild (Fan)	117 / 30
LS365	ss86352437	Genomic	GGGGCCAGGCAAAGCAGGCACAGCTGGTGA CCAGCCGGTCGGTAGCTTTGGTTCCAAGGT	A/T	CGATCCCGGATNCAGTGGAATCCTGTTCAA CGATGAGATGGACGACTCAGCTCCCCCAA		Large White, Landrace		\|\|GGT	By sequencing	Max Rothschild (Fan)	117 / 30
LS374	ss86352446	Genomic	GCCCACATGCCTCCCCGTCCATCTGTCACA ACTGCGCCAGGAGGTGGGCACAGTTCTTAT	C/T	CCCATTCTGCAGTTGAGGAATCTGGGGAAT GAGGAAATCAAATGTCTTRCTCAGTAGSCC		Large White, Landrace		\|\|ALOX5	By sequencing	Max Rothschild (Fan)	117 / 30
LS286	ss86352362	Genomic	TGGACAACTGCGAGGAGCTCATCCCTGAGT ATCTGAGTAAGTAGAGTTGAGCCTAAGAAA	C/T	GACGGCTGTCAAATTCATCCTGTCAACCCC GTGCCACGCGCGSAAGTTCCTGGGCCAGGG		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	116 / 30
LS337	ss86352409	Genomic	TATCGGTCTTCATAATAAAAGTTAGCATTT TYACCATTCAGTGGCACTCCCCGTCACCAC	C/T	GCCCATCTTGAGAACTTTCTCATCCTCCCA AACGGAAACCCTGTCCCCGTGAAACACCAA	0.4057	Large White, Landrace	18	IGFBP1\|Insulin like growth factor binding protein 1\|IGFBP1	By sequencing	Max Rothschild (Fan)	116 / 70
LS362	ss86352434	Genomic	TGAGCCTGAGTTCTACACACCGGATGACGC GGGCACCGCCCACCTATCTGTGGTCTCGGA	T/G	GATGGCAGCGCCGTGTCGRCCACCAGCACC ATCAACCTCTAgtaggggctgctgggtggc		Large White, Landrace		\|\|GGT	By sequencing	Max Rothschild (Fan)	116 / 30
LS287	ss86352363	Genomic	GAGTTGAGCCTAAGAAAYGACGGCTGTCAA ATTCATCCTGTCAACCCCGTGCCACGCGCG	C/G	AAGTTCCTGGGCCAGGGRTCACACCCACGC CACAGCAGAGACCYGAGCTACTTCAGTGCR		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	115 / 30
LS294	ss86352370	Genomic	TCGTTAACCCACTGTGCCACCAGAGACGGA AYTCCAGRCTTKGAAATGCATGGGGAAAAC	C/T	GCRTTCTCTTTGGGTTTAGCTGTTTGTTGA TTTTTGTCGGAGTGATTTTGAGTGCATTTG		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	114 / 30
LS295	ss86352371	Genomic	TTAACCCACTGTGCCACCAGAGACGGAAYT CCAGRCTTKGAAATGCATGGGGAAAACYGC	A/G	TTCTCTTTGGGTTTAGCTGTTTGTTGATTT TTGTCGGAGTGATTTTGAGTGCATTTGGCA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	114 / 30
LS288	ss86352364	Genomic	GACGGCTGTCAAATTCATCCTGTCAACCCC GTGCCACGCGCGSAAGTTCCTGGGCCAGGG	G/A	TCACACCCACGCCACAGCAGAGACCYGAGC TACTTCAGTGCRTTGCCAGATCGTTAACCC		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	113 / 30
LS291	ss86352367	Genomic	GACCYGAGCTACTTCAGTGCRTTGCCAGAT CGTTAACCCACTGTGCCACCAGAGACGGAA	T/C	TCCAGRCTTKGAAATGCATGGGGAAAACYG CRTTCTCTTTGGGTTTAGCTGTTTGTTGAT	0.0783	Large White, Landrace	7	\|\|HSP90	By sequencing	Max Rothschild (Fan)	113 / 70
LS292	ss86352368	Genomic	AGCTACTTCAGTGCRTTGCCAGATCGTTAA CCCACTGTGCCACCAGAGACGGAAYTCCAG	A/G	CTTKGAAATGCATGGGGAAAACYGCRTTCT CTTTGGGTTTAGCTGTTTGTTGATTTTTGT		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	113 / 30
LS293	ss86352369	Genomic	ACTTCAGTGCRTTGCCAGATCGTTAACCCA CTGTGCCACCAGAGACGGAAYTCCAGRCTT	G/T	GAAATGCATGGGGAAAACYGCRTTCTCTTT GGGTTTAGCTGTTTGTTGATTTTTGTCGGA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	113 / 30
LS290	ss86352366	Genomic	SAAGTTCCTGGGCCAGGGRTCACACCCACG CCACAGCAGAGACCYGAGCTACTTCAGTGC	G/A	TTGCCAGATCGTTAACCCACTGTGCCACCA GAGACGGAAYTCCAGRCTTG/TGAAATGCA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	112 / 30
LS289	ss86352365	Genomic	CCCCGTGCCACGCGCGSAAGTTCCTGGGCC AGGGRTCACACCCACGCCACAGCAGAGACC	C/T	GAGCTACTTCAGTGCRTTGCCAGATCGTTA ACCCACTGTGCCACCAGAGACGGAAYTCCA		Large White, Landrace		\|\|HSP90	By sequencing	Max Rothschild (Fan)	111 / 30
LS304	ss86352377	Genomic	GGGTGGGGGAGGGGTCAGAGAGTGGAGGAG GCTCCTCATTAGAGCTGGCCTGTGGGGGAA	T/C	GACAGAGGGTGGGGGAGGCACAGAGGCAGC AGGTCTGGNTGAGGTGCGGAAT		Large White, Landrace		\|\|GDF5	By sequencing	Max Rothschild (Fan)	111 / 30
LS309	ss86352382	Genomic	GCGTGGGTGTGGCCAGCGCCCCGAGGTGGG GGAGGGCGCGGGGATGGGGACGGGAGCTGC	A/C	CTGTCATGTGGCCCAGGAGATGGCCGCGCT GTGCTCCTTGGCCTTCAT		Large White, Landrace		\|\|AlX4	By sequencing	Max Rothschild (Fan)	108 / 30
LS321	ss86352394	Genomic	ACTYGAGGTCACTTGACTCCTGTCAGAAGG TCCCGGACCTTTCCTACTGCTGCCTTTGCC	G/A	TATTTGGGAATTTCATTATAATTCGTACTT TCAGCTCCATTCACTGCTG	0.2137	Large White, Landrace	8	MEPE\|Matrix extracellular phosphoglycoprotein with ASARM motif\|MEPE	By sequencing	Max Rothschild (Fan)	108 / 70
LS359	ss86352431	Genomic	TCCTTCTGGGTCTCCAGGTAAAGAGACAAG TGAGAGTCCCTGGAGCTC	G/A	GACCTCTTGATCGATGAAAACTGTTTGCTC TCCCCTTTGGCAGGAGAGGAGGATCCCTTC	0.2589	Large White, Landrace	2	GR\|Glucocorticoid receptor\|GR	By sequencing	Max Rothschild (Fan)	108 / 70
LS355	ss86352427	Genomic	GGAGCTAGCAAGGGGACGCTGGGGATTGTG ACATGGTTGGGGAGAGTCAAGTTTCAGAGC	T/C	GGCTCCCAGGAAAGAGGAAGCTGTGGCANC ATGGCCAGAGAGAATACTGAGAATCGKAGT	0.1526	Large White, Landrace	2	NST\|Nucleotide sugar transporter\|NST	By sequencing	Max Rothschild (Fan)	107 / 70
LS308	ss86352381	Genomic	GCTGGGAGGGAGGGGGCAGCGGGCACCAAG GCCGAGCCCCCCCCACCCCCCGCTCTTGGC	A/C	AGAGGCAGTGGAGAGGCCGGGTGCCCGAGG TTTGCAGCTTTGCATC		Large White, Landrace		\|\|AlX4	By sequencing	Max Rothschild (Fan)	105 / 30
LS363	ss86352435	Genomic	CCGGATGACGCGGGCACCGCCCACCTATCT GTGGTCTCGGAKGATGGCAGCGCCGTGTCG	A/G	CCACCAGCACCATCAACCTCTAGTAGGGGC TGCTGGGTGGCCTGGGTGGGCCAGGGGCTG		Large White, Landrace		\|\|GGT	By sequencing	Max Rothschild (Fan)	104 / 30
LS313	ss86352386	Genomic	CAGGCGCGCCAGCAGTCCGTACTTGTTCCG GTCGCGATCCGACGTGGTGATGTCCACCGC	G/T	CGGCCTTCATAATGCAGCGATTCCTCCGAG TGGTGACC		Large White, Landrace		\|\|SHH	By sequencing	Max Rothschild (Fan)	98 / 30
LS297	ss86352373	Genomic	TCTGCCATCTAGGAGCAGGAGTCGGGTGGC AGTGCTAGCAAGTCCAGGGCCTGGCGCATG	A/C	GGGACTCCAGATGGGGTAGAGAGGAGAAAT GCCCGA		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	96 / 30
LS306	ss86352379	Genomic	GCCCCAGCCGCCCGCCCCGCAGCCGCCGCA GCCGCAGCCCCAGCCGCAGCCCCAGCCGCC	A/C	GCGCAGCAACCGCATCTCTACTTACCG		Large White, Landrace		\|\|ALX4	By sequencing	Max Rothschild (Fan)	87 / 30
LS298	ss86352515	Genomic	GTGGCCCGGGCTGGGAAGAGCAGCCTGGCA AAGCAGACGCGTCCCAGCTCTGAACAGACA	T/C	GCCAGCTCTCCTCTGAAGCGAC		Large White, Landrace		\|\|ALP	By sequencing	Max Rothschild (Fan)	82 / 30

100 Rows queried.

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