SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP, Martien Groenen, Max Rothschild, Miguel Perez, Kwan-suk Kim, Gary Rohrer groups
Scores: [ Quality Score / Info. Score ]
(a) Sequence quality score: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
(b) Information score: Range: 10-70. The presence of (1) minor allele frquency (MAF), (2) chromosome location, (3) annotation, each add 20 to the total "info score".
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu (about the compilation of this data set).
Date: July 31, 2008

Records 9401 - 9500:

Custom Name	dbSNP id	Position	Length	Taxonomy	Molecule	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	MAF	MAF Species	Chromosome	Annotation	Reference	Source	Scores (seq.qual/info)
LS405	ss86352457				Genomic	ACCAAGGCAGTTAATTTTGCCAGAATCTTT AATGACATGCCTACCAGGAAAAAGGTAGGA	A/C	GAAAGGCCCCAGGGCGGTCCACAAGGTACC ACAGACAGCCTGTAACCCAAGGTCATTCTC	0.2593	Large White, Landrace	2	COL23A1\|Collagen, type XXIII, alpha 1\|COL23A1	By sequencing	Max Rothschild (Fan)	120 / 70
LS406	ss86352458				Genomic	ACCATGGCTACAGATGTTTGGGATCTCCCG ACACTCATTGCGTCCTGAGAGAAGGCAGGC	A/G	GCGTAGTGTCCCCAGGGACCCTCGTTCCCT GTGGGCTGCCATGGAGGAGCCTGACTCTGC	0.1402	Large White, Landrace	2	FBN3\|Fibrillin 3\|FBN3	By sequencing	Max Rothschild (Fan)	120 / 70
LS408	ss86352460				Genomic	AGCAACAGAGAGAAAGTTTCTAAGTGGCCC TAATGTGAAATGATTAGATTGCATACAAAG	G/T	GATATAAACAAATATTCATATTATATACAA ACATATATAGATGTGGTTCCAACACTTACA	0.2054	Large White, Landrace	8	GNRHR\|Gonadotropin-releasing hormone receptor\|GNR	By sequencing	Max Rothschild (Fan)	120 / 70
LS409	ss86352461				Genomic	CCGATTTATATGAAATCAAATTGATTCTGC TAAGGTATTAATGTAGTGCTTCATGGAGGA	C/T	GGTTTTAAATAAACATATTTATCTAACATT TGAATGCTCAGCAGTGTATGATTAAAAAAT		Large White, Landrace		\|\|GNR	By sequencing	Max Rothschild (Fan)	120 / 30
LS410	ss86352462				Genomic	TTGTAGAGCAATTGAATTGTTGGAAAAATT ACAGAGGAGTGGAGAGGTACCACCACAGAA	A/G	CTTCAGGCTTTACAAAGAGTCCTTCAGAGT GAATTCTGCAATGCTGTAAGAGAGGTGAGT	0.1001	Large White, Landrace	2	LIN7C\|Lin-7 homolog C\|LIN7C	By sequencing	Max Rothschild (Fan)	120 / 70
LS411	ss86352463				Genomic	TTACACACTGCACATTGCCTATTTTACAAA TTCAGCCACCACACAAGCTGTTTTGTGTAC	A/G	TGCCTTTTCTTGAAAACTAAGTTTCAGGGT GATAAAAACCTGAGTACATCCCCCCTCCCC		Large White, Landrace		\|\|LOX	By sequencing	Max Rothschild (Fan)	120 / 30
LS412	ss86352464				Genomic	TCAGGTCCCTTGGGAAGCATTGGAGCTGCT TGGCTGGGCTTTCTGCTGAGCTTCCGCGCC	C/T	TGGCCCTACTGCCCGTTGCAGCCCGACTGC TCTGTGCCCACAGCCCCCCGGGAGTGCGAG		Large White, Landrace		\|\|LRP4	By sequencing	Max Rothschild (Fan)	120 / 30
LS417	ss86352469				Genomic	ATCACGCTCTGTGACTTCATCGTGCCCTGG GACACCCTGAGCACCACCCAGAAGAAGAGC	C/T	TGAACCACAGGTACCAGATGGGCTGTGAGT GCAAGGTAAGCCTCTCCTCCTGGGCGTCAC	0.038	Large White, Landrace	12	TIMP2\|TIMP metallopeptidase inhibitor 2\|TIMP2	By sequencing	Max Rothschild (Fan)	120 / 70
LS418	ss86352470				Genomic	ACCGAGGTGGTGAGGCGCTGTCCCCACCAT GAGCGCAGCTCTGACTATAGCGATGGTGAG	C/T	GGGCGGGGGCTGTGGGTGGGACAGGGCTGG TGCCCGGAGCTGCCAAACCCCTCATTCCCA		Large White, Landrace		\|\|TP53	By sequencing	Max Rothschild (Fan)	120 / 30
LS501	ss86352471				Genomic	AGTTTGGGAAGAGCACATCCCCTGTGCCTT AGAGGACTTCCTCCCCAGAAAAGGGAGAGA	A/G	AAAGACTAGGAAGGCGGGAACAGAAGGGCC GGTTGTGCCTGTCGGGGTGGCGGCGCGGGA		Large White, Landrace		\|\|SRFP4	By sequencing	Max Rothschild (Fan)	120 / 30
LS502	ss86352472				Genomic	AGTGATTCTTTAAGAGAGGCTCAGGAGTTG GCACAAACACATCATCCTCATTTTTCTCCA	A/G	AGCTTCAACAACACATTTATCGATTTTTTT CAATTGCAGTCATTCATGCCAAAATAAAAG	0.0536	Large White, Landrace	9	SFRP4\|Secreted frizzled-related protein 4\|SRFP4	By sequencing	Max Rothschild (Fan)	120 / 70
LS503	ss86352473				Genomic	CCAGGACTGGGGCCCCAGCTACTTGCAGAC AAACTGGTCCACAACTTCCGTGCACTTCTT	A/G	CACCTGACGAAGCAGCACCAGTGGAACTTG CAGTGGCAGCGCTCCACCTGCACGCTCTTG		Large White, Landrace		\|\|Wnt5b	By sequencing	Max Rothschild (Fan)	120 / 30
LS506	ss86352476				Genomic	AAGGTGAGACGCTGGCGGGGCCCCTCCAAC CCCCCCCGCCCGGTCTCTTGGCCGGAGAAC	A/G	TGTTCCAGGAGCCACTCCATCCTCCACCCC ATGCCAAGCTCTGCCCACTGGGCACAAAGC	0.1755	Large White, Landrace	5	WNT7B\|Wingless related MMTV integration site 7B\|Wnt7b	By sequencing	Max Rothschild (Fan)	120 / 70
LS512	ss86352482				Genomic	CTTCTGAGATGAAGTGTCAGTAACTGCAGG GCTTCATTTTACTGAAACCGATAGGGCCGC	C/G	GGCAAAGACAAAGCTCTCTGCAGCCAGTCA GGCATCAGATCCCAGATGCAGGGTTTCCTG	0.1228	Large White, Landrace	8	\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	120 / 70
LS513	ss86352483				Genomic	ATTGAGGGTAAGGTGAGGGTTCCTTCATGT AAGTGTGTGGTTCCAGTCCAGACCCTGAGA	C/T	GCTCTGATAAAGAGCAGATTAGAAGACATT CAACAGGGGGCCGTCTTCCCTCTGTTTTCC		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	120 / 30
LS516	ss86352486				Genomic	TGAAATAAATGTTTTTCATACAATTGAAGT TTTTGTTTGTTTGTTTTTGGTCTCTTTTAG	A/G	GCCACACTGCAGCATACAGAATTTCCCAGG CTAGGGGTCAAATCCAAGCTGTAGCCCCCG		Large White, Landrace		\|\|BMPR2B	By sequencing	Max Rothschild (Fan)	120 / 30
LS517	ss86352487				Genomic	TTTTTCTTCTCCTGAATTTTATTTTTTATT TTAGTTTTTTGGCTCTCAGAGAAGCAGTGT	A/G	AGATTCTGACCTCTACTCAGTTAATAATTA ACGTATTGATTGTCTTGTATCTGTGTTTCC		Large White, Landrace		\|\|PPKAR	By sequencing	Max Rothschild (Fan)	120 / 30
LS518	ss86352488				Genomic	ACATTTAAGGGAGAGTTCATGAATCCTCCA AAAGATGAGCATAGTATGGGTATAAATCTT	C/T	GTGTTGAGAATCCATTCAATTAGGATGTCT AGTAGTGAGTGTACTGAGAAAATGGGTATT	0.3165	Large White, Landrace	5	IFN\|Interferon gamma\|IFNr	By sequencing	Max Rothschild (Fan)	120 / 70
LS519	ss86352489				Genomic	GAAAATGGGTATTAGTTTCTGACTTCTCAG GCTACTAGGACAGTGACAGTCAAAGGTCAA	C/T	ATTAGCATTAAAAATGGTTATGAAATAACT GATCAATTACAGAAGGTGAGGTCCTTAGGC		Large White, Landrace		\|\|IFNr	By sequencing	Max Rothschild (Fan)	120 / 30
LS601	ss86352495				Genomic	ATGCCCGCTGCTGTGGTGCTGCAGCCCCAG GTCTCCAGGCCCTTGGCTCTAAGTTCTGGC	A/G	GTAACAGTCCCTCCCTATGCCCGGTACAGA CAAAAACACTTGTTTAAATAACACACAATA	0.439	Large White, Landrace	2	IL13\|Interleukin 13\|IL13	By sequencing	Max Rothschild (Fan)	120 / 70
LS602	ss86352496				Genomic	ATGTACAGTCAGGCTCAAGTTGTGCAGTTC ACAAGCATGGAGAAAACAAAGAAACAAAAC	A/G	ACAGCGTTCTGGGCAGACGGAGCTAACCCA GGACGAGGCTGGACTTGCCGCCAGGGGGGT		Large White, Landrace		\|\|HN1	By sequencing	Max Rothschild (Fan)	120 / 30
LS606	ss86352500				Genomic	GCTGCAAATTGTGGAGATGCCCCTGGCCCA CAAGCTCTCCAGCCTCATCATCATCATGCC	C/T	CATCACGTGGAGCCCCTCGAGCGCCTTGAA AAGCTCCTGACCAAAGAGCAGCTGAAGATC		Large White, Landrace		\|\|SERPINH1	By sequencing	Max Rothschild (Fan)	120 / 30
LS613	ss86352507				Genomic	CAGCCTGAGAGCTGGGGATGTCTGTCCTCA TTTTACAAGTAAGAAAATTAAGGATAAGGA	G/T	TGTGTGCCTTGATTGTCTAACTCTGATGCA TGGCGCTGCATTTGCTTAAATTATGTCAAA	0.3236	Large White, Landrace	2	FGFR4\|Fibroblast growth factor receptor 4\|FGFR4	By sequencing	Max Rothschild (Fan)	120 / 70
LS614	ss86352508				Genomic	TAGGTACGTGCACCCGGGGCGGGGAGTGGG GAAGGTACGGGGCTCGGTGCGATGCGGACG	A/G	CCCTGGAGGGGACAGGAAGGCTTCCTGAAG GAGGCGCAGCGGCGTCTGGCAGCTCAGCAG		Large White, Landrace		\|\|HSD11B1L	By sequencing	Max Rothschild (Fan)	120 / 30
LS615	ss86352509				Genomic	CCTAGACATTAGAGGCAGCCATGTCAAGGT GACTGATGAATATTTAAAGGGAAAAGAGAA	A/C	CAGGTTAGATGCCCTGTGGTCTCGACCCCC ATAAAATCCCTCTTTCCAGATTCGTGCTCT		Large White, Landrace		\|\|RAMP	By sequencing	Max Rothschild (Fan)	120 / 30
LS616	ss86352510				Genomic	GTGTTGGGGAGCCATCTGTGACGCTAATGC CTCACAGTCAAAGCTTGTCAGCACTCATAT	A/C	ACAAAAAAGTGAAAACCCAACAATCAGGGG CTCCTCTCTGCTTACCCTGACCCTGTTCTT	0.2366	Large White, Landrace	2	INSL3\|Insulin-like 3\|INSL3	By sequencing	Max Rothschild (Fan)	120 / 70
LS617	ss86352511				Genomic	CCCTTGCATACTGATTATAAAATCGAGGCG AAATGTTTATTTTGTCCAGGCTTGCCCATT	C/T	CTACAGTTTGAGAAAGAAATGAACATGATC ATATGAGAGAGCCTGTTGTGGCATCAAATT		Large White, Landrace		\|\|RAMP1	By sequencing	Max Rothschild (Fan)	120 / 30
LS407	ss86352459				Genomic	CCCTTAGGGCTGAGCAAGAGTCTGGGACTA AAATGCCTACCCCAATAGGAAGAGACACCC	A/C	TTCCCACCCCCTGAGAGCCAAGCCCCYCCT CCACCCCCTCCCCAGGGTGATGGATTAGAA		Large White, Landrace		\|\|FBN3	By sequencing	Max Rothschild (Fan)	119 / 30
LS504	ss86352474				Genomic	CTCGTTGCGCAGGCAGTAGTCCGGGCTGGG GTCCACGTAGACCAGGTCCTCGGGGGTGGG	C/T	TGGTTGAAGCGGCTGTTGACCAGCTCCAAC TTGCCCCTGCGGGTGATRCGCATGGCGGCT		Large White, Landrace		\|\|Wnt5b	By sequencing	Max Rothschild (Fan)	119 / 30
LS505	ss86352475				Genomic	CTCGGGGGTGGGYTGGTTGAAGCGGCTGTT GACCAGCTCCAACTTGCCCCTGCGGGTGAT	A/G	CGCATGGCGGCTGCGCTGTCATACTTCTCC TTCAGCTGGTCCCCCACCTTGCGGAACTCA		Large White, Landrace		\|\|Wnt5b	By sequencing	Max Rothschild (Fan)	119 / 30
LS510	ss86352480				Genomic	GCTTGCTCTGCAATGTTTTGCCCCGTCACT GCAATCCAGTGTCTCAAATGATCTTCCTTT	T/G	TGCATCTTCAGGTATAAAAGGCAAGAAACC AGACCCCGGTACAGCATTGGTTTAGAACAG	0.2173	Large White, Landrace	8	BMPR1B\|Bone morphogenic protein receptor 1\|BMPR1B	By sequencing	Max Rothschild (Fan)	119 / 70
LS511	ss86352481				Genomic	TCAGGTATAAAAGGCAAGAAACCAGACCCC GGTACAGCATTGGTTTAGAACAGGATGAAA	C/T	GTATATTCCTCCTGGAGAATCCCTGAGGGA CTTAATTGAGCAGTCTCAGAGCTCAGGAAG		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	119 / 30
LS515	ss86352485				Genomic	ATGCGTTCTGAGATTCTTCTTCCTCCACAC ATCACATGTGCACACAGAGCACGGATCTCA	A/G	GGTCTTTGCCAAGGAGCAAGAACCAGTTAT TTTCTTGCAAAAGACTTCGGAGCTAAAAAT	0.4965	Large White, Landrace	8	\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	119 / 70
LS603	ss86352497				Genomic	GATAGGTTGGTTTTTTATAATTTGTTTTAT GCTGTCATATGTTCTATCCAGGTAGCTTCA	C/T	ATAGCTGCTTCTCTTTTCTTCTCTCTCTGA AGATACAAAGTTTAGATTTCTTCAGAATAT	0.1784	Large White, Landrace	2	HSD17B12\|Hydroxysteroid (17-beta) dehydrogenase 12\|HSD17B12	By sequencing	Max Rothschild (Fan)	119 / 70
LS607	ss86352501				Genomic	AAGGAGACAGTTTTACACAGTATTCCGAAG AAACTTCTAACCATCTAGAAGAAGGCTATT	A/G	CCGTCAGAYTGACTGACTGCCTAGAGATGT TCCATGCGAGGTAAACGGTGTAGACTCTTG		Large White, Landrace		\|\|ADAMTS19	By sequencing	Max Rothschild (Fan)	119 / 30
LS609	ss86352503				Genomic	GCTGCATCGCTGGTCTGTCCTGACCTGGGG TCTTGGCCGCCTCTTCCAGNGGCTTCTGAG	C/T	ACTTCCTCATGCCAGAAGGTCCCTCTTTGC CCCTGTGGATTTAACTCTTCGCAAGGAGAC		Large White, Landrace		\|\|FDXR	By sequencing	Max Rothschild (Fan)	119 / 30
LS610	ss86352504				Genomic	AAGCCCGTCGCCATGTGGTCTGGATCCTCC ACTGTAAGAAGAGCCGTGGTTGATACTGTT	C/T	CTCCCCCATCCCCCYGCCCCCACCCCGTCT CCCTTTACGCTCATTTTCACAAGGAATGGA		Large White, Landrace		\|\|WT1	By sequencing	Max Rothschild (Fan)	119 / 30
LS611	ss86352505				Genomic	TCACATTTCCAGCAACAAGGGTATTTCATG ASAGGTGCATTAAAAAAAGAGAGATGAAAA	C/T	GTAATTAGTTTGTTGAGCTCTACATTTTGA GCACTTGGGTGTATTTAGGTACTAACTTTT		Large White, Landrace		\|\|CANX	By sequencing	Max Rothschild (Fan)	119 / 30
LS413	ss86352465				Genomic	CCTGRGCCCCTTCTGTGGGGTGACGTCCCT CCCAAGGGGCGCCTTTCGGAGGGACCTCTG	C/G	CTAGCCAGCAACATATGNGTGCCAGGCAAG CCTGTGTTTGTCTGAAACCCACTGAGACCC	0.1935	Large White, Landrace	6	MMP2\|Matrix Metalloproteinases\|MMP2	By sequencing	Max Rothschild (Fan)	118 / 70
LS415	ss86352467				Genomic	ATCTTCGGGGAGGGCTACAGCAACAGCCAC AAGTCCGGAGAGCAGTACTGCGTGTTCAAC	C/T	GCAACGACGANGCCTGCCGCTATGGCAGCG CCATCGGGGTGCTGGCCTTCCTGGGCTCCG	0.2375	Large White, Landrace	12	\|\|SYGR2	By sequencing	Max Rothschild (Fan)	118 / 70
LS507	ss86352477				Genomic	GGAACTCCATGGTAGTAGCTATTATAGTAG CTGCCTTCCCTATAGAACTTAGGGGTGCTC	C/T	GGGCTAGGCTTCTCAGTTTAGCAGTGCTCC TTCTGGAAAGAGCACTGGACTGGGARTCAG		Large White, Landrace		\|\|Wnt10b	By sequencing	Max Rothschild (Fan)	118 / 30
LS508	ss86352478				Genomic	GCTCYGGGCTAGGCTTCTCAGTTTAGCAGT GCTCCTTCTGGAAAGAGCACTGGACTGGGA	A/G	TCAGGACAACTAGARCTGAGTCCTGTGGCC TGCTAGTTACCAGCTGTCTCTGTCACCAGC		Large White, Landrace		\|\|Wnt10b	By sequencing	Max Rothschild (Fan)	118 / 30
LS509	ss86352479				Genomic	TCTCAGTTTAGCAGTGCTCCTTCTGGAAAG AGCACTGGACTGGGARTCAGGACAACTAGA	A/G	CTGAGTCCTGTGGCCTGCTAGTTACCAGCT GTCTCTGTCACCAGCTAGTGGTTGAAGATG	0.3826	Large White, Landrace	5	WNT10B\|Wingless related MMTV integration site 10 B\|Wnt10b	By sequencing	Max Rothschild (Fan)	118 / 70
LS608	ss86352502				Genomic	ACTTAGAATGATAATCCCTAGTTGCGTCAT TATAATCATTTTCAACCTTACAAATCATCC	C/T	GCYCATCCTCTTGTTGAAARCGTGGAAACC AAGCAGCAAGCAGGTTATGTCCCAATTCAC	0.4406	Large White, Landrace	2	ADAMTS19\|ADAM metallopeptidase with thrombospondin type 1 motif, 19\|ADAMTS19	By sequencing	Max Rothschild (Fan)	118 / 70
LS612	ss86352506				Genomic	ATCAGCTGGTTTGATRCACGTAGCTGCAGG TCCGCAAGGTTTTSTGCAGCCCGGTTTTGG	A/G	ACATCTGGCTTCATACAACCTGGCACAGAG CAGCCTGGCTTGGTCCAGCCTGGTGCACCT	0.0702	Large White, Landrace	12	DKFZ\|Hypothetical protein DKFZp434P0316\|DK	By sequencing	Max Rothschild (Fan)	118 / 70
LS514	ss86352484				Genomic	TGTAAATGCCACCACCACTGTCCAGAAGAC TCAGTCAACAATATTTGCAGGTTGGTCAAA	A/G	CAATTRTTTAACTCTAGTTTTAACAGGAGG TCATCCTTTTTGGACCATAGAATTGTAGGC		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	117 / 30
LS520	ss86352490				Genomic	TGCCACCACCACTGTCCAGAAGACTCAGTC AACAATATTTGCAGGTTGGTCAAARCAATT	A/G	TTTAACTCTAGTTTTAACAGGAGGTCATCC TTTTTGGACCATAGAATTGTAGGCTAGTGT		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	117 / 30
LS523	ss86352493				Genomic	GCTAGTGTTTCCAAGAACACATTTTRGGAA ATRGCACCTAACTCCATTAACTCATGGAGC	C/T	GCACCTYTATGTACAGAAGTATTGAATTGC ATTTTGCCCTGAAATGCGTTCTGAGATTCT		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	117 / 30
LS414	ss86352466				Genomic	ACCGTGACNGTGGGGCTNGGGAGGTGTGGG GGCAGCCCCCGGGTCCCCAGACCTCTCCGG	C/T	AGATAGGCTGGCACACAGGGTTTCTGACCA TCTGCCGAAACCCACTGGTGCTGAGTGGGG	0.3851	Large White, Landrace	12	SYNGR2\|Synaptogyrin 2\|SYGR2	By sequencing	Max Rothschild (Fan)	116 / 70
LS524	ss86352494				Genomic	TTTCCAAGAACACATTTTRGGAAATRGCAC CTAACTCCATTAACTCATGGAGCYGCACCT	C/T	TATGTACAGAAGTATTGAATTGCATTTTGC CCTGAAATGCGTTCTGAGATTCTTCTTCCT		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	116 / 30
LS416	ss86352468				Genomic	ATGTACCGCTCCCCGTGGACGCTTAGCGCC ACCCCCCAGCTCATCCGAAAGCAGATGTGA	C/T	GGCCCCAGAAARGGAACAGGCTCYGMGGTG TCATTTGGCAGAGCAGGCACTGCSTGGAGG	0.2858	Large White, Landrace	2	TGFB1\|Transforming growth factor beta1\|TGFB1	By sequencing	Max Rothschild (Fan)	115 / 70
LS521	ss86352491				Genomic	CAGGAGGTCATCCTTTTTGGACCATAGAAT TGTAGGCTAGTGTTTCCAAGAACACATTTT	A/G	GGAAATRGCACCTAACTCCATTAACTCATG GAGCYGCACCTYTATGTACAGAAGTATTGA		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	115 / 30
LS522	ss86352492				Genomic	TCATCCTTTTTGGACCATAGAATTGTAGGC TAGTGTTTCCAAGAACACATTTTRGGAAAT	A/G	GCACCTAACTCCATTAACTCATGGAGCYGC ACCTYTATGTACAGAAGTATTGAATTGCAT		Large White, Landrace		\|\|BMPR1B	By sequencing	Max Rothschild (Fan)	115 / 30
LS604	ss86352498				Genomic	ATTCAGGGGCCYGGGGCGGGAGTCAGGGAA GGTGCATGTCATAGAAGCYCCAGGGGCKCC	C/T	GTGCTGGCTGCCCACGCTTTGAGGAGCACA GGTCAAGATTGCTTAGCGGAGCCAGGCATG		Large White, Landrace		\|\|SERPINH1	By sequencing	Max Rothschild (Fan)	115 / 30
LS605	ss86352499				Genomic	ATGTACCGCTCCCCGTGGACGCTTAGCGCC ACCCCCCAGCTCATCCGAAAGCAGATGTGA	C/T	GGCCCCAGAAARGGAACAGGCTCYGMGGTG TCATTTGGCAGAGCAGGCACTGCSTGGAGG		Large White, Landrace		\|\|TGFB1	By sequencing	Max Rothschild (Fan)	115 / 30
BGISUSV0000300001	ss86217939	69586	61	9823		CTGCTCAAGTTAAGACAACACTAAATATGA	C/G	TTTCCGAACTGATTATCTCACCATGGTTCT			1	VPS13A\|Change amino acid:a	SANGERun\|bE157O15	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300005	ss86217942	75131	61	9823		AGCAGTGTCTCTGAGTTCATCCTCCTGGGA	A/C	TCTCCTCTCGGCCCGAGGACCAGAAGCCAC			1	OR1L8\|Change amino acid:a	SANGERun\|bE184P19	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300006	ss86217943	75436	61	9823		TCCTTCTAGTAGTCATGGCCTTTGACCGCT	A/T	TGTGGCCATCTGTGATCCCTTCCACTATGT			1	OR1L8\|Change amino acid:a	SANGERun\|bE184P19	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300010	ss86217947	50339	61	9823		GTGTTTGGATGCCTGGACAATTTAATCCTG	A/G	CCGTGATGGCCTATGACCGCTTTGTGGCCA			2	OR7C2\|Change amino acid:a	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300011	ss86217948	50339	61	9823		TACACAGTCATCATGAACCCCCAGGTGTGT	A/G	GGATGCTGGCTCTGGGGTCCTGGTGCATCA			2	OR7C2\|Change amino acid:a	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300012	ss86217949	50339	61	9823		GCTTGATACTTTGACCCTCTTGAGGCTGTC	T/C	TTCTGCATGAACATGAACATTCCACACTTC			2	OR7C2\|Change amino acid:s	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300013	ss86217950	50339	61	9823		CTTCCTGAAGTCCTAAAGCTTGCCTGTTCA	A/G	ATACCCTCATCAATAACATAGTAGTATATT			2	OR7C2\|Change amino acid:a	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300014	ss86217951	50339	61	9823		TTGCCTGTTCAGATACCCTCATCAATAACA	T/C	AGTAGTATATTTTGTTGTTGTTGTCCTAGG			2	OR7C2\|Change amino acid:a	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300015	ss86217952	50339	61	9823		TGTTGTCCTAGGTATTTTTCCTCTCTCTGG	T/G	ATCCTCTTTTCTTATTCTCAGATTTTCTCC			2	OR7C2\|Change amino acid:s	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300016	ss86217953	50339	61	9823		AAGCCTTGGGGTCTACCTCAGTTCGGCAGC	A/G	ACTTCATCCTCTAGGACAAGTCTGGTGGCC			2	OR7C2\|Change amino acid:s	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300017	ss86217954	50339	61	9823		GTACACCATGATCACCCCCATGCTGAACCC	T/C	TTCATCTACAGTCTGAGGAACAGGGACATG			2	OR7C2\|Change amino acid:s	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300018	ss86217955		61	9823		GACATGAAGAGGGCCCTGGGAAGACTCCTC	A/G	GCAGAGTAGCATCTCTCAGTGATGGGGTTG			2	OR7C2\|Change amino acid:a	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300025	ss86217958	173462	61	9823		CAAGCCCAGGTCCTCTGCATTAGCCTCCTC	C/G	CCGCTAAGTCTCCAGTCTCTCTGCTCCCTG			7	FSD2\|Change amino acid:s	SANGERun\|bE227P18	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300027	ss86217960	104721	61	9823		TAGCAGGGACGGGTCCAGGAGCTCCATCAT	T/C	TACTCGATCTCAGTGTCCAGTTCCAGCATG			17	RIN2\|Change amino acid:s	SANGERun\|bE394D15	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300029	ss86217961	41265	61	9823		CCGAACAGTCACTCCCCATTTCTGTCGCTG	A/G	CGGCCTGTTTTGTGCTGGTTCTCATAGGCT			14	ZNF22\|Change amino acid:s	SANGERun\|bE250J15	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300060	ss86217985	109719	61	9823		AAAGTTTCTCAAAAAGTTGTTTCTCTGTGT	T/C	AGAAAAGCTGCCAGAATTCCTCTAGAAATA			11	UGCGL2\|Change amino acid:s	SANGERun\|bE150D7	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300062	ss86217986	52386	61	9823		CGCCCAGCAGGCGATGAAGACGCCCAGCAC	T/C	ATAATCACCGTCTTGAGCAGCGCCAGGGAC			4	EDG1\|Change amino acid:s	SANGERun\|bE463K19	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300063	ss86217987	52386	61	9823		CGCCCAGCAGGCGATGAAGACGCCCAGCAC	T/C	ATAATCACCGTCTTGAGCAGCGCCAGGGAC			4	EDG1\|Change amino acid:s	SANGERun\|bE463K19	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300069	ss86217993	131832	61	9823		TGGGGCAATTATTGGTCTATATTTTCTTCC	T/C	TCATCCAACAACACCAATGACAGTAACATA			1	OR1J1\|Change amino acid:s	SANGERun\|bE23K22	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300070	ss86217994	131868	61	9823		CAACAACACCAATGACAGTAACATAATTGC	A/T	TCACTGATGTACACAGTGGTCATGCCCATG			1	OR1J1\|Change amino acid:s	SANGERun\|bE23K22	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300071	ss86217995	131894	61	9823		TAATTGCTTCACTGATGTACACAGTGGTCA	T/C	GCCCATGTTGCATCCTTCATTTATAGCCTG			1	OR1J1\|Change amino acid:a	SANGERun\|bE23K22	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300072	ss86217996	131895	61	9823		AATTGCTTCACTGATGTACACAGTGGTCAT	A/G	CCCATGTTGCATCCTTCATTTATAGCCTGA			1	OR1J1\|Change amino acid:a	SANGERun\|bE23K22	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300073	ss86217997	131905	61	9823		CTGATGTACACAGTGGTCATGCCCATGTTG	A/C	ATCCTTCATTTATAGCCTGAGAAATAAAGA			1	OR1J1\|Change amino acid:a	SANGERun\|bE23K22	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300081	ss86217999	46938	61	9823		TGAAGATAAATTTAACAGTAAAGTTCTCAT	T/C	GAAAAACCCACCACCAGTGAACCTGTGGCA			14	SLK\|Change amino acid:s	SANGERun\|bE23L13	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300082	ss86218000	88159	61	9823		GCAGAAGGAGAGGAAGCTGGAGCTGGTGGC	T/G	CGGAGGAAGTGGAAACAGTACTGGGTGACG			1	TIAM2\|Change amino acid:s	SANGERun\|bE21C2	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300083	ss86218001	79775	61	9823		AACCTTCTGCACTTTAATATGATTAGCGCA	T/C	AAGCCGCTGTACAGCTTAAAGTGGTCCGCA			1	TIAM2\|Change amino acid:s	SANGERun\|bE147K17	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300086	ss86218002	106402	61	9823		ACGATGCGGTCGGGGTTACTAAGGAAGACG	A/G	GGGCACCGGTATGTGGCTAGGGCTGCTAAA			18	PTPRZ1\|Change amino acid:a	SANGERas\|bE269N20	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300087	ss86218003	73474	61	9823		CTGTTGGCTGATCAGGATCAGAAAATATTT	T/G	CATTAAAGAATAAACTCAAGGAACTTGGTC			14	USO1\|Change amino acid:a	SANGERun\|bE283L3	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300089	ss86218005	120852	61	9823		TAGATGATGGCTTGCTGGATGATGGCCACA	A/G	TGATCAAGTTGGTGTTTTAAATTCACCCAC			8	CPEB2\|Change amino acid:a	SANGERun\|bE303M16	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300104	ss86218019	161260	61	9823		CGTCACCTTGGTGTACATGGTGGGCAATCA	A/T	ATTCCTTCCTCAATGGCACAGTGGCTAGCA			10	C11orf41\|Change amino acid:a	SANGERun\|bT149L18	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300107	ss86218020	148534	61	9823		AGGACCCAAGGACCCTGTGGAGCTGACATA	A/C	TACATCCTCTACAATGGGAAGCCTTTGCTT			10	C11orf41\|Change amino acid:s	SANGERun\|bT149L18	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300108	ss86218021	148533	61	9823		GGACCCAAGGACCCTGTGGAGCTGACATAC	T/G	ACATCCTCTACAATGGGAAGCCTTTGCTTG			10	C11orf41\|Change amino acid:a	SANGERun\|bT149L18	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300111	ss86218023	55587	61	9823		GTTTCCACCAGATGGAAAAAATGGTTCGTG	A/G	ACTTGGGGTACAAATTTTGCATAGACCCCC			1	ATP8B1\|Change amino acid:s	SANGERun\|bE25F12	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300114	ss86218025	90298	61	9823		GAAACAGAGAGTGGCCAGCTGATGCTCTCA	A/G	AATTGAAGTCCCGACCTCGAAGAGAACCCA			1	VNN3\|Change amino acid:a	SANGERun\|bE393L4	Miguel Perez (PIGGIS)	60 / 50
BGISUSV0000300002	ss86220761	100490	60	9823		AATTCTTTTGCTACTTGCCCTTTTTTATCT	A/G	CAAACATCATACCTTCTGAAAGAAAAAAG			16	C5orf34\|Change amino acid:a	SANGERun\|bE366J11	Miguel Perez (PIGGIS)	59 / 50
BGISUSV0000300004	ss86217941	75107	58	9823		ATGGAAAGAGTCAACCAAACCAGCAGT	C/G	TCTCTGAGTTCATCCTCCTGGGACTCTCCT			1	OR1L8\|Change amino acid:a	SANGERun\|bE184P19	Miguel Perez (PIGGIS)	57 / 50
BGISUSV0000300023	ss86220765	149161	56	9823		AGAAGAGATTGGAGCTGGAAAGGAAACTCT	A/T	TGAATGTAATCCATCTGATATATGC			17	C20orf19\|Change amino acid:a	SANGERun\|bE277K1	Miguel Perez (PIGGIS)	55 / 50
BGISUSV0000300026	ss86217959	173553	56	9823		GGAGGATACTCTGAAACCTCTATTCTGGGC	T/C	TGCTTTCGTCAACGAATGCATCGCC			7	FSD2\|Change amino acid:a	SANGERun\|bE227P18	Miguel Perez (PIGGIS)	55 / 50
BGISUSV0000300022	ss86220764	149175	54	9823		AGTGAAAAGAAGAGATTGGAGCT	A/G	GAAAGGAAACTCTATGAATGTAATCCATCT			17	C20orf19\|Change amino acid:s	SANGERun\|bE277K1	Miguel Perez (PIGGIS)	53 / 50
BGISUSV0000300105	ss86220784	159569	53	9823		AATATCCCAACCTTGATATATCAGAAACAA	T/C	CACAGACTATTGGGTAATTACA			10	C11orf41\|Change amino acid:a	SANGERun\|bT149L18	Miguel Perez (PIGGIS)	52 / 50
BGISUSV0000300019	ss86220762		49	9823		CAGCAGAGTAGCATCTCTCAGTGATGGGGT	T/C	GTAGCAGGATTCTCATAA			2	OR7C2\|Change amino acid:s	SANGERun\|bE56A14	Miguel Perez (PIGGIS)	48 / 50
BGISUSV0000300061	ss86220774	101040	48	9823		GCAGAGACGTCTCCTAA	T/C	GGCCCAGATTGCGGTTATGGCTCCTTTCAC			14	ATE1\|Change amino acid:s	SANGERun\|bE241M3	Miguel Perez (PIGGIS)	47 / 50
BGISUSV0000300106	ss86220785	148572	46	9823		ATGGTAAAGATGCAG	T/C	GGGTGCCAGGACCCAAGGACCCTGTGGAGC			10	C11orf41\|Change amino acid:a	SANGERun\|bT149L18	Miguel Perez (PIGGIS)	45 / 50
BGISUSV0000300084	ss86220781	79832	42	9823		CGCATAATAAAGGAAAGAGCCTCCAAGGGA	T/C	AACAGTAGTTT			1	TIAM2\|Change amino acid:s	SANGERun\|bE147K17	Miguel Perez (PIGGIS)	41 / 50
BGISUSV0000300039	ss86220771	15996	41	9823		TCTACAGAATCTTGTTTCACTGGGCATCTT	A/G	GAAAAGAATT			4	FAM102B\|Change amino acid:a	SANGERun\|bE141A1	Miguel Perez (PIGGIS)	40 / 50

100 Rows queried.

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