Cattle QTL Database

Release 56
(Apr 24, 2025)

Curators: Zhiliang Hu / Cari Park
Curated: 2019-02-20
Updated: 2024-04-23

Publication # 30994194 Details

Authors:	Clancey E, Kiser JN, Moraes JGN, Dalton J, Spencer TE, Neibergs HL (Contact: neibergs@wsu.edu)
Affiliation:	Department of Animal Sciences, Washington State University, Pullman WA 99164; Division of Animal Sciences, University of Missouri, Columbia MO 65211; Department of Animal and Veterinary Sciences, University of Idaho, Caldwell ID 83605
Title:	Genome-Wide association analysis and gene set enrichment analysis-SNP identify genes associated with 305-day milk yield in Holstein dairy cows
Journal:	Animal Genetics, 50(3):254-258 (2019)	DOI: 10.1111/age.12792
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Milk yield reported for chromosome(s): Chr.1: Asso:168207, Asso:168211, Asso:168244. Chr.3: Asso:168213. Chr.5: Asso:168241. Chr.6: Asso:168210, Asso:168216, Asso:168230. Chr.7: Asso:168206. Chr.9: Asso:168208, Asso:168212. Chr.10: Asso:168247. Chr.11: Asso:168220, Asso:168225, Asso:168226, Asso:168242, Asso:168248. Chr.12: Asso:168222, Asso:168224. Chr.13: Asso:168218, Asso:168228. Chr.14: Asso:168168, Asso:168169, Asso:168170, Asso:168171, Asso:168172, Asso:168173, Asso:168174, Asso:168175, Asso:168176, Asso:168177, Asso:168178, Asso:168179, Asso:168180, Asso:168181, Asso:168182, Asso:168184, Asso:168185, Asso:168186, Asso:168187, Asso:168188, Asso:168195, Asso:168229, Asso:168233. Chr.15: Asso:168223, Asso:168240, Asso:168252. Chr.18: Asso:168235, Asso:168251, Asso:168254. Chr.19: Asso:168202, Asso:168203, Asso:168217, Asso:168238, Asso:168239, Asso:168246. Chr.20: Asso:168245. Chr.21: Asso:168249. Chr.22: Asso:168221, Asso:168236, Asso:168243, Asso:168255. Chr.23: Asso:168183, Asso:168189, Asso:168190, Asso:168191, Asso:168192, Asso:168193, Asso:168194, Asso:168196, Asso:168197, Asso:168198, Asso:168199, Asso:168200, Asso:168201, Asso:168214, Asso:168215, Asso:168234, Asso:168250, Asso:168253. Chr.24: Asso:168227. Chr.25: Asso:168232. Chr.26: Asso:168205, Asso:168219. Chr.27: Asso:168204, Asso:168209, Asso:168237. Chr.29: Asso:168231. QTL/association Reported by chromosomes: Chr.1 (3), Chr.3 (1), Chr.5 (1), Chr.6 (3), Chr.7 (1), Chr.9 (2), Chr.10 (1), Chr.11 (5), Chr.12 (2), Chr.13 (2), Chr.14 (23), Chr.15 (3), Chr.18 (3), Chr.19 (6), Chr.20 (1), Chr.21 (1), Chr.22 (4), Chr.23 (18), Chr.24 (1), Chr.25 (1), Chr.26 (2), Chr.27 (3), Chr.29 (1). Number of gene-based eQTL/associations: None Supplementary data: Map: SNP reference map saved as a MAP file (1 compressed text file in a table format) Genotype: SNP genotypes and animal IDs (1 compressed .ped file) Phenotype: Animal ID's, phenotypes, and covariates used in the GWAA and GSEA analyses (1 compressed text file in a table format)

Cite this Dataset:

Animal QTLdb: Dataset from Clancey E, Kiser JN, Moraes JGN, Dalton J, Spencer TE, Neibergs HL (2019). Genome-Wide association analysis and gene set enrichment analysis-SNP identify genes associated with 305-day milk yield in Holstein dairy cows. Animal Genetics, 50(3):254-258; Curated into QTLdb on 2019-02-25. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=HmXa5N7TzN

Clancey E, Kiser JN, Moraes JGN, Dalton J, Spencer TE, Neibergs HL (2019). Genome-Wide association analysis and gene set enrichment analysis-SNP identify genes associated with 305-day milk yield in Holstein dairy cows. Animal Genetics, 50(3):254-258; DOI: https://dx.doi.org/10.1111/age.12792

Publication # 30994194 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations:

Supplementary data: