| QTL Map Information |
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| Chromosome: | 27 |
| QTL Peak Location: | 8.06 (cM) |
| QTL Span: | 8.06-8.06 (cM)
30.5-30.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs133124927 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.94E-02 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | The data set consisted of 781 primiparious Holstein cows |
| Breeds associated:
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| Design: | Animals were genotyped using the BovineHD BeadChip (777,962 SNPs) to identify QTL and leading edge genes associated with 305-day milk yield (kg). Data was collected on healthy animals from six dairies from central Washington. Dairy and energy corrected milk were used as covariates in the analysis. |
| Analysis: | A genome-wide association analysis (GWAA) identified QTL and a gene set enrichment analysis with SNP data (GSEA-SNP) identified gene sets and leading edge genes influencing 305-day milk yield. |
| Software: | Golden Helix SNP and Variation Suite (SVS), R - GenAbel |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Clancey E, Kiser JN, Moraes JGN, Dalton J, Spencer TE, Neibergs HL |
| Affiliation: | Department of Animal Sciences, Washington State University, Pullman WA 99164; Division of Animal Sciences, University of Missouri, Columbia MO 65211; Department of Animal and Veterinary Sciences, University of Idaho, Caldwell ID 83605 |
| Title: | Genome-Wide association analysis and gene set enrichment analysis-SNP identify genes associated with 305-day milk yield in Holstein dairy cows |
| Journal: | Animal Genetics, 2019, 50(3):254-258 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | GSEA gene proxy for AGPAT5 |
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