A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
NP_001070687.1   ENSSSCG00000004317 1:60111548-60135644   CU075926,CH242-86H13,1:59921397-60144581
(Clone quality: bE86H13 on chr=1; Num_of_Contigs=1; )
NP_001090953.1   ENSSSCG00000004480 1:95630299-95786257    
NP_001090953.1   ENSSSCG00000004483 1:95811844-95818519   CU041245,CH242-386L24,1:95792114-95906480
(Clone quality: bE386L24 on chr=1; Num_of_Contigs=3; )
NP_001092057.1   ENSSSCG00000010534 14:114431683-114455959   CT827798,CH242-157A12,14:114417850-114551680
(Clone quality: bE157A12 on chr=14; Num_of_Contigs=2; )
NP_001094497.1   ENSSSCG00000001718 7:48483301-48580425    
NP_001096681.1   ENSSSCG00000010365 14:91810716-91815594   CU633355,CH242-179A13,14:91776156-91937562
(Clone quality: bE179A13 on chr=14; Num_of_Contigs=3; )
NP_001096681.1   ENSSSCG00000010362 14:91695965-91700812   CU041359,CH242-97P15,14:91656528-91726690
(Clone quality: bE97P15 on chr=14; Num_of_Contigs=11; )
NP_001098768.1   ENSSSCG00000005692 1:284943472-284953474   CU459043,CH242-114M9,1:284900822-284986124
(Clone quality: bE114M9 on chr=1; Num_of_Contigs=4; )
NP_001098768.1   ENSSSCG00000005676 1:284519253-284529241    
NP_001098768.1   ENSSSCG00000005692 1:284943472-284953474   CU459043,CH242-114M9,1:284900822-284986124
(Clone quality: bE114M9 on chr=1; Num_of_Contigs=4; )
NP_001098768.1   ENSSSCG00000005676 1:284519253-284529241    
NP_001107172.1   ENSSSCG00000007498 17:59621962-59623791 CR956640,CH242-155M9,17:59463698-59643740
(No clone quality info on bE155M9) 		 
NP_001116548.1   ENSSSCG00000006754 4:110229095-110252361   CU393558,CH242-266G7,4:110202821-110378185
(Clone quality: bE266G7 on chr=4; Num_of_Contigs=1; )
NP_001116561.1   ENSSSCG00000001427 7:27890046-27905155 CT956038,CH242-183N12,7:27767223-27953076
(Clone quality: bE183N12 on chr=7; Num_of_Contigs=3; ) 		 
NP_001116574.1   ENSSSCG00000006560 4:99757482-99763246   CU468620,CH242-99G21,4:99706339-99812454
(Clone quality: bE99G21 on chr=4; Num_of_Contigs=4; )
NP_001116574.1   ENSSSCG00000006566 4:99944902-99950901   CU407290,CH242-513B13,4:99941652-99962687
(Clone quality: bE513B13 on chr=4; Num_of_Contigs=7; )
NP_001116604.1   ENSSSCG00000001241 7:24747464-24752076 CU607067,CH242-469P22,7:24676460-24783185
(Clone quality: bE469P22 on chr=7; Num_of_Contigs=2; ) 		 
NP_001116694.1   ENSSSCG00000000042 5:2981241-2989711 BX296515,PigE-121D21,5:2907737-3087427
(Clone quality: bT121D21 on chr=5; Num_of_Contigs=8; ) 		 
NP_954660 location ⇒ 5:15008005-15007644   CU856260,CH242-249K5,5:14983385-15022104
(Clone quality: bE249K5 on chr=5; Num_of_Contigs=8; )
NP_954660 location ⇒ 5:15015839-15015625   CU856260,CH242-249K5,5:14983385-15022104
(Clone quality: bE249K5 on chr=5; Num_of_Contigs=8; )
NP_999579.1   ENSSSCG00000010546 14:115994622-116026754    
NP_999585.1   ENSSSCG00000010488 14:111627139-111667418   CU392852,CH242-517O10,14:111617888-111696161
(Clone quality: bE517O10 on chr=14; Num_of_Contigs=2; )
NQO1 ENSSSCG00000002754 6:12192118-12202101    
NQO1 location ⇒ 6:12192155-12192407   FP102513,CH242-97F24,6:12184989-12196005
(Clone quality: bE97F24 on chr=6; Num_of_Contigs=5; )
NQO1 location ⇒ 6:12195150-12195317   FP102513,CH242-97F24,6:12184989-12196005
(Clone quality: bE97F24 on chr=6; Num_of_Contigs=5; )
NQO1 location ⇒ 6:12195403-12195536   FP102513,CH242-97F24,6:12184989-12196005
(Clone quality: bE97F24 on chr=6; Num_of_Contigs=5; )
NQO1 location ⇒ 6:12201182-12202106   CU694694,CH242-24K10,6:12196006-12310048
(Clone quality: bE24K10 on chr=6; Num_of_Contigs=3; )
NR0B1 ENSSSCG00000012199 X:25539750-25544828 CU481468,CH242-251P3,X:25520154-25682978
(Clone quality: bE251P3 on chr=X; Num_of_Contigs=1; ) 		 
NR0B1 location ⇒ X:25540069-25539750 CU481468,CH242-251P3,X:25520154-25682978
(Clone quality: bE251P3 on chr=X; Num_of_Contigs=1; ) 		 
NR0B1 location ⇒ X:25544828-25543631 CU481468,CH242-251P3,X:25520154-25682978
(Clone quality: bE251P3 on chr=X; Num_of_Contigs=1; ) 		 
NR0B2   ENSSSCG00000003565 6:57894243-57896604   FP015947,CH242-485K18,6:57822585-57995160
(Clone quality: bE485K18 on chr=6; Num_of_Contigs=2; )
NR1D1   ENSSSCG00000017481 12:20078361-20079467   FP015991,CH242-327H5,12:20074847-20079877
(Clone quality: bE327H5 on chr=12; Num_of_Contigs=8; )
NR1H2   ENSSSCG00000003211 6:38942228-38949163   FP102476,CH242-133P5,6:38933742-38971020
(Clone quality: bE133P5 on chr=6; Num_of_Contigs=12; )
NR1H3   ENSSSCG00000013241 2:13340303-13350223   CU469364,CH242-119B4,2:13316728-13478061
(Clone quality: bE119B4 on chr=2; Num_of_Contigs=2; )
NR1H4   ENSSSCG00000000875 5:79371678-79415734    
NR1I2   ENSSSCG00000011890 13:104974812-104979179   CU464151,CH242-19K1,13:104974384-104979421
(Clone quality: bE19K1 on chr=13; Num_of_Contigs=7; )
NR1I3   ENSSSCG00000006353 4:92735010-92740063   CU606874,CH242-28G15,4:92698180-92745360
(Clone quality: bE28G15 on chr=4; Num_of_Contigs=6; )
NR2C1   ENSSSCG00000000902 5:83194262-83227921   FP236518,CH242-227I8,5:83186552-83230674
(Clone quality: bE227I8 on chr=5; Num_of_Contigs=3; )
NR2C2 ENSSSCG00000011594 13:57721526-57899246    
NR2C2 location ⇒ 13:2592677-2592592   CU914425,CH242-36L15,13:2583794-2593656
(Clone quality: bE36L15 on chr=13; Num_of_Contigs=16; )
NR2C2 location ⇒ 13:5429902-5429821   CU972467,CH242-419L13,13:5416777-5440733
(Clone quality: bE419L13 on chr=13; Num_of_Contigs=9; )
NR2C2 location ⇒ 13:7214693-7214802   CU466415,CH242-65F3,13:7204813-7268036
(Clone quality: bE65F3 on chr=13; Num_of_Contigs=3; )
NR2C2 location ⇒ 13:912281-912374   CU633332,CH242-130E2,13:864497-950101
(Clone quality: bE130E2 on chr=13; Num_of_Contigs=3; )
NR2E1   ENSSSCG00000004384 1:77851596-77871232   CU469092,CH242-73E11,1:77831921-77891718
(Clone quality: bE73E11 on chr=1; Num_of_Contigs=6; )
NR2F1   ENSSSCG00000014157 2:89790905-89800303    
NR2F2   ENSSSCG00000002254 7:91195566-91206740    
NR2F6   ENSSSCG00000013873 2:61671685-61682925    
NR3C1 ENSSSCG00000014401 2:131600820-131630614 CU928713,CH242-105G5,2:131552911-131650388
(Clone quality: bE105G5 on chr=2; Num_of_Contigs=5; ) 		 
NR3C1 location ⇒ 2:131601277-131600870 CU928713,CH242-105G5,2:131552911-131650388
(Clone quality: bE105G5 on chr=2; Num_of_Contigs=5; ) 		 
NR3C1 location ⇒ 2:131601559-131601325 CU928713,CH242-105G5,2:131552911-131650388
(Clone quality: bE105G5 on chr=2; Num_of_Contigs=5; ) 		 
Go to records:
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Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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