Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

B0LXF7_PIG		ENSSSCG00000007411	17:49890360-49894235		CU683881,CH242-15E11,17:49860118-49901162 (Clone quality: bE15E11 on chr=17; Num_of_Contigs=8; )
B0LXF7_PIG		ENSSSCG00000007399	17:49622928-49626803		CU606851,CH242-219J22,17:49616444-49630834 (Clone quality: bE219J22 on chr=17; Num_of_Contigs=12; )
B29		ENSSSCG00000004521	1:103561675-103584829
B29		ENSSSCG00000017283	12:12626857-12630260		CU466386,CH242-271O11,12:12583385-12667411 (Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )
B2CAW6_PIG		ENSSSCG00000000099	5:5656591-5667018
B2CAW6_PIG		ENSSSCG00000000098	5:5550200-5560777
B2CR56_PIG		ENSSSCG00000012422	X:59336833-59358393		FP102145,CH242-190N13,X:59314273-59359136 (Clone quality: bE190N13 on chr=X; Num_of_Contigs=22; )
B2CR56_PIG		ENSSSCG00000012422	X:59336833-59358393		FP102145,CH242-190N13,X:59314273-59359136 (Clone quality: bE190N13 on chr=X; Num_of_Contigs=22; )
B2D2K8_PIG		ENSSSCG00000008449	3:89536750-89563047
B2G3E4_PIG		ENSSSCG00000008191	3:51494003-51494062		CU972426,CH242-225E13,3:51493213-51511881 (Clone quality: bE225E13 on chr=3; Num_of_Contigs=9; )
B2M		ENSSSCG00000004687	1:132812013-132896242
B2M		ENSSSCG00000004682	1:132684316-132690961		CU640392,CH242-218F20,1:132673358-132786983 (Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )
B2M		location ⇒	1:132687048-132686773		CU640392,CH242-218F20,1:132673358-132786983 (Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )
B2M		location ⇒	1:132687048-132686773		CU640392,CH242-218F20,1:132673358-132786983 (Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )
B2M		location ⇒	1:132893749-132894024		CU651564,CH242-259N6,1:132861802-132901801 (Clone quality: bE259N6 on chr=1; Num_of_Contigs=11; )
B2M		location ⇒	1:132893749-132894024		CU651564,CH242-259N6,1:132861802-132901801 (Clone quality: bE259N6 on chr=1; Num_of_Contigs=11; )
B2M0Z5_PIG		ENSSSCG00000015911	15:68029954-68100204
B2MU85_PIG		ENSSSCG00000006565	4:99942152-99944230		CU407290,CH242-513B13,4:99941652-99962687 (Clone quality: bE513B13 on chr=4; Num_of_Contigs=7; )
B2MU85_PIG		ENSSSCG00000006559	4:99754872-99756939		CU468620,CH242-99G21,4:99706339-99812454 (Clone quality: bE99G21 on chr=4; Num_of_Contigs=4; )
B2R		ENSSSCG00000002500	7:126331175-126332251		CU928480,CH242-520I18,7:126321577-126345667 (Clone quality: bE520I18 on chr=7; Num_of_Contigs=25; )
B2R		location ⇒	7:126330954-126332143		CU928480,CH242-520I18,7:126321577-126345667 (Clone quality: bE520I18 on chr=7; Num_of_Contigs=25; )
B2X0A4_PIG		ENSSSCG00000017399	12:17825982-17828345		FP016109,CH242-242A5,12:17788506-17858714 (Clone quality: bE242A5 on chr=12; Num_of_Contigs=4; )
B2XWS1_PIG		ENSSSCG00000006924	4:132081789-132097522		CU151869,CH242-289B10,4:132020285-132181322 (Clone quality: bE289B10 on chr=4; Num_of_Contigs=2; )
B2XWS1_PIG		ENSSSCG00000006924	4:132081789-132097522		CU151869,CH242-289B10,4:132020285-132181322 (Clone quality: bE289B10 on chr=4; Num_of_Contigs=2; )
B2ZF50_PIG		ENSSSCG00000006722	4:106090151-106092353		FP085508,CH242-231G6,4:106083730-106093242 (Clone quality: bE231G6 on chr=4; Num_of_Contigs=14; )
B3FQ81_PIG		ENSSSCG00000005230	1:229474306-229475020		CU694733,CH242-460E7,1:229472007-229475859 (Clone quality: bE460E7 on chr=1; Num_of_Contigs=9; )
B3FVQ2_PIG		ENSSSCG00000013579	2:51131323-51134839		CU929919,CH242-334A8,2:51130325-51145834 (Clone quality: bE334A8 on chr=2; Num_of_Contigs=7; )
B3GALNT2		ENSSSCG00000010153	14:56972147-56991239		CT978605,CH242-112N20,14:56970257-56992766 (Clone quality: bE112N20 on chr=14; Num_of_Contigs=7; )
B3GALT1		ENSSSCG00000015918	15:69949751-69950731		CU595477,CH242-250N19,15:69947535-69957671 (Clone quality: bE250N19 on chr=15; Num_of_Contigs=11; )
B3GALT2		ENSSSCG00000010800	10:1528452-1529720		CU929655,CH242-497M20,10:1526778-1531182 (Clone quality: bE497M20 on chr=10; Num_of_Contigs=12; )
B3GALT3		location ⇒	9:34830657-34828920		CU638665,CH242-137H5,9:34811466-34880430 (Clone quality: bE137H5 on chr=9; Num_of_Contigs=2; )
B3GALT3		location ⇒	9:34830758-34830664		CU638665,CH242-137H5,9:34811466-34880430 (Clone quality: bE137H5 on chr=9; Num_of_Contigs=2; )
B3GALT4		ENSSSCG00000001503	7:34050866-34051999	CU607018,CH242-138E20,7:33930957-34116846 (Clone quality: bE138E20 on chr=7; Num_of_Contigs=1; )
B3GALT5		ENSSSCG00000012070	13:143260587-143261522		CU929841,CH242-58D24,13:143237842-143271306 (Clone quality: bE58D24 on chr=13; Num_of_Contigs=4; )
B3GALTL		ENSSSCG00000009335	11:7292515-7475340
B3GAT1		ENSSSCG00000015259	9:59287480-59384534
B3GAT2		ENSSSCG00000004277	1:53353380-53451632
B3GAT2		location ⇒	1:53353691-53353595		CU633557,CH242-213I12,1:53278811-53396854 (Clone quality: bE213I12 on chr=1; Num_of_Contigs=3; )
B3GAT2		location ⇒	1:53353931-53353779		CU633557,CH242-213I12,1:53278811-53396854 (Clone quality: bE213I12 on chr=1; Num_of_Contigs=3; )
B3GAT2		location ⇒	1:53408934-53408787		CU302350,CH242-155K24,1:53396855-53543381 (Clone quality: bE155K24 on chr=1; Num_of_Contigs=2; )
B3GAT2		location ⇒	1:53452076-53451400		CU302350,CH242-155K24,1:53396855-53543381 (Clone quality: bE155K24 on chr=1; Num_of_Contigs=2; )
B3GNT1		ENSSSCG00000008374	3:73228974-73230080
B3GNT3		ENSSSCG00000013886	2:62071027-62074197		CU928970,CH242-349K2,2:62018597-62084904 (Clone quality: bE349K2 on chr=2; Num_of_Contigs=3; )
B3GNT4		ENSSSCG00000009798	14:30629389-30630042		CU468822,CH242-327O18,14:30629387-30651966 (Clone quality: bE327O18 on chr=14; Num_of_Contigs=28; )
B3GNT6		ENSSSCG00000014874	9:11052945-11054084		FP089538,CH242-169J5,9:11052820-11057530 (Clone quality: bE169J5 on chr=9; Num_of_Contigs=5; )
B3GNT7		ENSSSCG00000016274	15:124438865-124440070		CU856676,CH242-83A8,15:124433170-124442074 (Clone quality: bE83A8 on chr=15; Num_of_Contigs=8; )
B3GNT8		ENSSSCG00000003008	6:33941820-33943013		FP236582,CH242-238L13,6:33921264-33956509 (Clone quality: bE238L13 on chr=6; Num_of_Contigs=11; )
B3GPK8_PIG		ENSSSCG00000006721	4:106026418-106026591		CU407304,CH242-94E3,4:105905928-106042836 (Clone quality: bE94E3 on chr=4; Num_of_Contigs=1; )
B3VN87_PIG		ENSSSCG00000017964	12:50127768-50149779		CU972380,CH242-124B22,12:50126282-50177524 (Clone quality: bE124B22 on chr=12; Num_of_Contigs=7; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

B0LXF7_PIG

ENSSSCG00000007411

17:49890360-49894235

CU683881,CH242-15E11,17:49860118-49901162
(Clone quality: bE15E11 on chr=17; Num_of_Contigs=8; )

B0LXF7_PIG

ENSSSCG00000007399

17:49622928-49626803

CU606851,CH242-219J22,17:49616444-49630834
(Clone quality: bE219J22 on chr=17; Num_of_Contigs=12; )

B29

ENSSSCG00000004521

1:103561675-103584829

B29

ENSSSCG00000017283

12:12626857-12630260

CU466386,CH242-271O11,12:12583385-12667411
(Clone quality: bE271O11 on chr=12; Num_of_Contigs=5; )

B2CAW6_PIG

ENSSSCG00000000099

5:5656591-5667018

B2CAW6_PIG

ENSSSCG00000000098

5:5550200-5560777

B2CR56_PIG

ENSSSCG00000012422

X:59336833-59358393

FP102145,CH242-190N13,X:59314273-59359136
(Clone quality: bE190N13 on chr=X; Num_of_Contigs=22; )

B2CR56_PIG

ENSSSCG00000012422

X:59336833-59358393

FP102145,CH242-190N13,X:59314273-59359136
(Clone quality: bE190N13 on chr=X; Num_of_Contigs=22; )

B2D2K8_PIG

ENSSSCG00000008449

3:89536750-89563047

B2G3E4_PIG

ENSSSCG00000008191

3:51494003-51494062

CU972426,CH242-225E13,3:51493213-51511881
(Clone quality: bE225E13 on chr=3; Num_of_Contigs=9; )

B2M

ENSSSCG00000004687

1:132812013-132896242

B2M

ENSSSCG00000004682

1:132684316-132690961

CU640392,CH242-218F20,1:132673358-132786983
(Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )

B2M

location ⇒

1:132687048-132686773

CU640392,CH242-218F20,1:132673358-132786983
(Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )

B2M

location ⇒

1:132687048-132686773

CU640392,CH242-218F20,1:132673358-132786983
(Clone quality: bE218F20 on chr=1; Num_of_Contigs=3; )

B2M

location ⇒

1:132893749-132894024

CU651564,CH242-259N6,1:132861802-132901801
(Clone quality: bE259N6 on chr=1; Num_of_Contigs=11; )

B2M

location ⇒

1:132893749-132894024

CU651564,CH242-259N6,1:132861802-132901801
(Clone quality: bE259N6 on chr=1; Num_of_Contigs=11; )

B2M0Z5_PIG

ENSSSCG00000015911

15:68029954-68100204

B2MU85_PIG

ENSSSCG00000006565

4:99942152-99944230

CU407290,CH242-513B13,4:99941652-99962687
(Clone quality: bE513B13 on chr=4; Num_of_Contigs=7; )

B2MU85_PIG

ENSSSCG00000006559

4:99754872-99756939

CU468620,CH242-99G21,4:99706339-99812454
(Clone quality: bE99G21 on chr=4; Num_of_Contigs=4; )

B2R

ENSSSCG00000002500

7:126331175-126332251

CU928480,CH242-520I18,7:126321577-126345667
(Clone quality: bE520I18 on chr=7; Num_of_Contigs=25; )

B2R

location ⇒

7:126330954-126332143

CU928480,CH242-520I18,7:126321577-126345667
(Clone quality: bE520I18 on chr=7; Num_of_Contigs=25; )

B2X0A4_PIG

ENSSSCG00000017399

12:17825982-17828345

FP016109,CH242-242A5,12:17788506-17858714
(Clone quality: bE242A5 on chr=12; Num_of_Contigs=4; )

B2XWS1_PIG

ENSSSCG00000006924

4:132081789-132097522

CU151869,CH242-289B10,4:132020285-132181322
(Clone quality: bE289B10 on chr=4; Num_of_Contigs=2; )

B2XWS1_PIG

ENSSSCG00000006924

4:132081789-132097522

CU151869,CH242-289B10,4:132020285-132181322
(Clone quality: bE289B10 on chr=4; Num_of_Contigs=2; )

B2ZF50_PIG

ENSSSCG00000006722

4:106090151-106092353

FP085508,CH242-231G6,4:106083730-106093242
(Clone quality: bE231G6 on chr=4; Num_of_Contigs=14; )

B3FQ81_PIG

ENSSSCG00000005230

1:229474306-229475020

CU694733,CH242-460E7,1:229472007-229475859
(Clone quality: bE460E7 on chr=1; Num_of_Contigs=9; )

B3FVQ2_PIG

ENSSSCG00000013579

2:51131323-51134839

CU929919,CH242-334A8,2:51130325-51145834
(Clone quality: bE334A8 on chr=2; Num_of_Contigs=7; )

B3GALNT2

ENSSSCG00000010153

14:56972147-56991239

CT978605,CH242-112N20,14:56970257-56992766
(Clone quality: bE112N20 on chr=14; Num_of_Contigs=7; )

B3GALT1

ENSSSCG00000015918

15:69949751-69950731

CU595477,CH242-250N19,15:69947535-69957671
(Clone quality: bE250N19 on chr=15; Num_of_Contigs=11; )

B3GALT2

ENSSSCG00000010800

10:1528452-1529720

CU929655,CH242-497M20,10:1526778-1531182
(Clone quality: bE497M20 on chr=10; Num_of_Contigs=12; )

B3GALT3

location ⇒

9:34830657-34828920

CU638665,CH242-137H5,9:34811466-34880430
(Clone quality: bE137H5 on chr=9; Num_of_Contigs=2; )

B3GALT3

location ⇒

9:34830758-34830664

CU638665,CH242-137H5,9:34811466-34880430
(Clone quality: bE137H5 on chr=9; Num_of_Contigs=2; )

B3GALT4

ENSSSCG00000001503

7:34050866-34051999

CU607018,CH242-138E20,7:33930957-34116846
(Clone quality: bE138E20 on chr=7; Num_of_Contigs=1; )

B3GALT5

ENSSSCG00000012070

13:143260587-143261522

CU929841,CH242-58D24,13:143237842-143271306
(Clone quality: bE58D24 on chr=13; Num_of_Contigs=4; )

B3GALTL

ENSSSCG00000009335

11:7292515-7475340

B3GAT1

ENSSSCG00000015259

9:59287480-59384534

B3GAT2

ENSSSCG00000004277

1:53353380-53451632

B3GAT2

location ⇒

1:53353691-53353595

CU633557,CH242-213I12,1:53278811-53396854
(Clone quality: bE213I12 on chr=1; Num_of_Contigs=3; )

B3GAT2

location ⇒

1:53353931-53353779

CU633557,CH242-213I12,1:53278811-53396854
(Clone quality: bE213I12 on chr=1; Num_of_Contigs=3; )

B3GAT2

location ⇒

1:53408934-53408787

CU302350,CH242-155K24,1:53396855-53543381
(Clone quality: bE155K24 on chr=1; Num_of_Contigs=2; )

B3GAT2

location ⇒

1:53452076-53451400

CU302350,CH242-155K24,1:53396855-53543381
(Clone quality: bE155K24 on chr=1; Num_of_Contigs=2; )

B3GNT1

ENSSSCG00000008374

3:73228974-73230080

B3GNT3

ENSSSCG00000013886

2:62071027-62074197

CU928970,CH242-349K2,2:62018597-62084904
(Clone quality: bE349K2 on chr=2; Num_of_Contigs=3; )

B3GNT4

ENSSSCG00000009798

14:30629389-30630042

CU468822,CH242-327O18,14:30629387-30651966
(Clone quality: bE327O18 on chr=14; Num_of_Contigs=28; )

B3GNT6

ENSSSCG00000014874

9:11052945-11054084

FP089538,CH242-169J5,9:11052820-11057530
(Clone quality: bE169J5 on chr=9; Num_of_Contigs=5; )

B3GNT7

ENSSSCG00000016274

15:124438865-124440070

CU856676,CH242-83A8,15:124433170-124442074
(Clone quality: bE83A8 on chr=15; Num_of_Contigs=8; )

B3GNT8

ENSSSCG00000003008

6:33941820-33943013

FP236582,CH242-238L13,6:33921264-33956509
(Clone quality: bE238L13 on chr=6; Num_of_Contigs=11; )

B3GPK8_PIG

ENSSSCG00000006721

4:106026418-106026591

CU407304,CH242-94E3,4:105905928-106042836
(Clone quality: bE94E3 on chr=4; Num_of_Contigs=1; )

B3VN87_PIG

ENSSSCG00000017964

12:50127768-50149779

CU972380,CH242-124B22,12:50126282-50177524
(Clone quality: bE124B22 on chr=12; Num_of_Contigs=7; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC