A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
JAG1 ENSSSCG00000007067 17:19688741-19725371    
JAG1 location ⇒ 17:19710935-19710727   CU672248,CH242-357N21,17:19683064-19711759
(Clone quality: bE357N21 on chr=17; Num_of_Contigs=3; )
JAG1 location ⇒ 17:19715520-19715468   CU672248,CH242-357N21,17:19711860-19724344
(Clone quality: bE357N21 on chr=17; Num_of_Contigs=3; )
JAG1 location ⇒ 17:19724378-19724071   CU672248,CH242-357N21,17:19711860-19724344
(Clone quality: bE357N21 on chr=17; Num_of_Contigs=3; )
CU041271,CH242-37O22,17:19724345-19772517
(Clone quality: bE37O22 on chr=17; Num_of_Contigs=2; )
JAG1 location ⇒ 17:19724862-19724786   CU041271,CH242-37O22,17:19724345-19772517
(Clone quality: bE37O22 on chr=17; Num_of_Contigs=2; )
JAG2 ENSSSCG00000002555 7:133157408-133176657    
JAGN1   ENSSSCG00000011558 13:55342148-55344699   CU633418,CH242-443E24,13:55338751-55347451
(Clone quality: bE443E24 on chr=13; Num_of_Contigs=9; )
JAK1 ENSSSCG00000003809 6:103915378-104010734    
JAK1 location ⇒ 6:103994831-103995033   CU694905,CH242-39L24,6:103981187-104011744
(Clone quality: bE39L24 on chr=6; Num_of_Contigs=4; )
JAK1 location ⇒ 6:103994831-103995033   CU694905,CH242-39L24,6:103981187-104011744
(Clone quality: bE39L24 on chr=6; Num_of_Contigs=4; )
JAK1 location ⇒ 6:104010381-104010724   CU694905,CH242-39L24,6:103981187-104011744
(Clone quality: bE39L24 on chr=6; Num_of_Contigs=4; )
JAK1 location ⇒ 6:104010381-104010724   CU694905,CH242-39L24,6:103981187-104011744
(Clone quality: bE39L24 on chr=6; Num_of_Contigs=4; )
JAK2 ENSSSCG00000005215 1:226776007-227058933    
JAK2 location ⇒ 1:226777213-226776007   CU861563,CH242-39E11,1:226772701-226787342
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
JAK2 location ⇒ 1:226870974-226870650   CU861563,CH242-39E11,1:226828156-226877286
(Clone quality: bE39E11 on chr=1; Num_of_Contigs=5; )
JAK2 location ⇒ 1:227000943-227000730   CU928554,CH242-181K22,1:226995601-227011152
(Clone quality: bE181K22 on chr=1; Num_of_Contigs=4; )
JAK2 location ⇒ 1:227053047-227052794   CU928554,CH242-181K22,1:227040843-227053390
(Clone quality: bE181K22 on chr=1; Num_of_Contigs=4; )
JAK3 ENSSSCG00000017783 12:43013508-43100067    
JAK3 ENSSSCG00000013888 2:62084730-62099077    
JAK3 location ⇒ 2:62085173-62083858   CU463003,CH242-317A24,2:62084905-62151709
(Clone quality: bE317A24 on chr=2; Num_of_Contigs=2; )
CU928970,CH242-349K2,2:62018597-62084904
(Clone quality: bE349K2 on chr=2; Num_of_Contigs=3; )
JAK3 location ⇒ 2:62086351-62086239   CU463003,CH242-317A24,2:62084905-62151709
(Clone quality: bE317A24 on chr=2; Num_of_Contigs=2; )
JAK3 location ⇒ 2:62086940-62086709   CU463003,CH242-317A24,2:62084905-62151709
(Clone quality: bE317A24 on chr=2; Num_of_Contigs=2; )
JAK3 location ⇒ 2:62087367-62086784   CU463003,CH242-317A24,2:62084905-62151709
(Clone quality: bE317A24 on chr=2; Num_of_Contigs=2; )
JAKMIP1   ENSSSCG00000008710 8:2182348-2246561   CU929574,CH242-147B3,8:2179517-2248943
(Clone quality: bE147B3 on chr=8; Num_of_Contigs=3; )
JAKMIP2   ENSSSCG00000014420 2:134553641-134609923    
JAM2 location ⇒ 13:1693-1806   CU928239,CH242-498F20,13:1-4335
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
JAM2 location ⇒ 13:24499-24584   CU928239,CH242-498F20,13:4436-31895
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
JAM2 location ⇒ 13:56021-55924   CU928239,CH242-498F20,13:48087-70232
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
JAM2 location ⇒ 13:89602-89501   CU928239,CH242-498F20,13:77539-107266
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
JAM3 ENSSSCG00000015256 9:59144401-59152084    
JAM3 location ⇒ 9:59144989-59145103   CU929202,CH242-306L17,9:59132748-59146122
(Clone quality: bE306L17 on chr=9; Num_of_Contigs=5; )
JAM3 location ⇒ 9:59148416-59148569   CU929202,CH242-306L17,9:59146223-59162267
(Clone quality: bE306L17 on chr=9; Num_of_Contigs=5; )
JAM3 location ⇒ 9:59148989-59149195   CU929202,CH242-306L17,9:59146223-59162267
(Clone quality: bE306L17 on chr=9; Num_of_Contigs=5; )
JAM3 location ⇒ 9:59151054-59151183   CU929202,CH242-306L17,9:59146223-59162267
(Clone quality: bE306L17 on chr=9; Num_of_Contigs=5; )
JARID2 ENSSSCG00000001061 7:11883054-12003955    
JAZF1   ENSSSCG00000016691 18:43263269-43313537    
JFC1 ENSSSCG00000003572 6:58233785-58242719   CU466983,CH242-5M3,6:58217448-58296419
(Clone quality: bE5M3 on chr=6; Num_of_Contigs=5; )
JFC1 location ⇒ 6:58235999-58236230   CU466983,CH242-5M3,6:58217448-58296419
(Clone quality: bE5M3 on chr=6; Num_of_Contigs=5; )
JFC1 location ⇒ 6:58240594-58240755   CU466983,CH242-5M3,6:58217448-58296419
(Clone quality: bE5M3 on chr=6; Num_of_Contigs=5; )
JFC1 location ⇒ 6:58242088-58242295   CU466983,CH242-5M3,6:58217448-58296419
(Clone quality: bE5M3 on chr=6; Num_of_Contigs=5; )
JFC1 location ⇒ 6:58242484-58242714   CU466983,CH242-5M3,6:58217448-58296419
(Clone quality: bE5M3 on chr=6; Num_of_Contigs=5; )
JHDM1D   ENSSSCG00000016501 18:7964037-8041059    
JMJD1C   ENSSSCG00000010226 14:69315608-69363005    
JMJD4   ENSSSCG00000013983 2:66113822-66119002    
JMJD5   ENSSSCG00000007818 3:17752698-17766574   CU695068,CH242-516C10,3:17751325-17766657
(Clone quality: bE516C10 on chr=3; Num_of_Contigs=21; )
JMJD7   ENSSSCG00000004741 1:136052058-136055774   FP236593,CH242-77C19,1:136049249-136061603
(Clone quality: bE77C19 on chr=1; Num_of_Contigs=12; )
JMJD8   ENSSSCG00000007988 3:35508671-35752802    
JMY   ENSSSCG00000014112 2:77182728-77245759    
JPH1   ENSSSCG00000006174 4:63701343-63898899    
Go to records:
1-49, 50-16

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Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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