A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
RP11-345P4.4 location ⇒ 6:43099924-43099795   FP102593,CH242-171J19,6:43085672-43100160
(Clone quality: bE171J19 on chr=6; Num_of_Contigs=11; )
RP2 ENSSSCG00000002861 6:28549611-28558497    
RP2 ENSSSCG00000014851 9:9179857-9211105   CU655994,CH242-280C8,9:9168027-9211748
(Clone quality: bE280C8 on chr=9; Num_of_Contigs=8; )
RP2 ENSSSCG00000010634 14:128418173-128655869    
RP2 ENSSSCG00000008160 3:47646110-47670156   CU929680,CH242-116J7,3:47645559-47673106
(Clone quality: bE116J7 on chr=3; Num_of_Contigs=4; )
RP2 ENSSSCG00000006892 4:127690915-127704329   CU582963,CH242-133N10,4:127667298-127798755
(Clone quality: bE133N10 on chr=4; Num_of_Contigs=2; )
RPA1 ENSSSCG00000008226 3:53578822-53658397   CU570839,CH242-286N20,3:53540211-53717808
(Clone quality: bE286N20 on chr=3; Num_of_Contigs=1; )
RPA1 ENSSSCG00000017822 12:45446532-45485050   CU914290,CH242-53A19,12:45441876-45568865
(Clone quality: bE53A19 on chr=12; Num_of_Contigs=6; )
RPA2   ENSSSCG00000003583 6:58564508-58577788   CU928393,CH242-274K17,6:58557338-58588041
(Clone quality: bE274K17 on chr=6; Num_of_Contigs=5; )
RPA3 location ⇒ 12:49073244-49073504   FP015831,CH242-271O18,12:49066522-49076220
(Clone quality: bE271O18 on chr=12; Num_of_Contigs=4; )
RPAP1   ENSSSCG00000004745 1:136249712-136267202   CU633572,CH242-274F1,1:136202998-136286247
(Clone quality: bE274F1 on chr=1; Num_of_Contigs=12; )
RPAP3   ENSSSCG00000000813 5:73514369-73597172    
RPE65   ENSSSCG00000003794 6:101668104-101688622   CU929726,CH242-22F14,6:101656130-101836468
(Clone quality: bE22F14 on chr=6; Num_of_Contigs=1; )
RPGR   ENSSSCG00000012235 X:33691105-33745516    
RPGRIP1L   ENSSSCG00000002833 6:21957507-21962762   CU929599,CH242-240L15,6:21775601-21963374
(Clone quality: bE240L15 on chr=6; Num_of_Contigs=1; )
RPH3A   ENSSSCG00000009883 14:39211622-39275982    
RPIA   ENSSSCG00000008207 3:52429048-52459313   CU694848,CH242-221I5,3:52408559-52460472
(Clone quality: bE221I5 on chr=3; Num_of_Contigs=4; )
RPL10L   ENSSSCG00000005001 1:185268691-185269335   CU041312,CH242-393M19,1:185231080-185303343
(Clone quality: bE393M19 on chr=1; Num_of_Contigs=5; )
RPL18A   ENSSSCG00000013889 2:62114183-62117628   CU463003,CH242-317A24,2:62084905-62151709
(Clone quality: bE317A24 on chr=2; Num_of_Contigs=2; )
RPL19   ENSSSCG00000015408 9:94207224-94207812   CU694649,CH242-92C16,9:94197879-94306673
(Clone quality: bE92C16 on chr=9; Num_of_Contigs=5; )
RPL21   ENSSSCG00000009303 11:3806315-3810805    
RPL22L1   ENSSSCG00000006770 4:111951920-111952279   CU463248,CH242-400P6,4:111906000-111962256
(Clone quality: bE400P6 on chr=4; Num_of_Contigs=4; )
RPL24 ENSSSCG00000004613 1:121344824-121360709    
RPL24 ENSSSCG00000011952 13:115580960-115587885   CU633680,CH242-251F9,13:115560062-115745735
(Clone quality: bE251F9 on chr=13; Num_of_Contigs=2; )
RPL26L1   ENSSSCG00000016989 16:48676058-48684478    
RPL27A   ENSSSCG00000014569 9:139941-142948   FP102759,CH242-92D2,9:128239-154503
(Clone quality: bE92D2 on chr=9; Num_of_Contigs=7; )
RPL28   ENSSSCG00000016281 15:124740253-124741260   CU929067,CH242-404N18,15:124702988-124748215
(Clone quality: bE404N18 on chr=15; Num_of_Contigs=8; )
RPL3 location ⇒ 6:257866-257594   FP102614,CH242-198I21,6:256719-261768
(Clone quality: bE198I21 on chr=6; Num_of_Contigs=22; )
RPL3 location ⇒ 6:88798722-88798791   CU467007,CH242-257B4,6:88779922-88820115
(Clone quality: bE257B4 on chr=6; Num_of_Contigs=2; )
RPL30   ENSSSCG00000006081 4:38920882-38924729   CU234130,CH242-486G18,4:38913729-38968007
(Clone quality: bE486G18 on chr=4; Num_of_Contigs=7; )
RPL32 ENSSSCG00000011585 13:57160391-57166672    
RPL32 location ⇒ 1:187502231-187502181   CU469097,CH242-382H23,1:187499551-187503835
(Clone quality: bE382H23 on chr=1; Num_of_Contigs=18; )
RPL32 location ⇒ 1:187557616-187557666   CU487218,CH242-247B17,1:187537839-187560599
(Clone quality: bE247B17 on chr=1; Num_of_Contigs=9; )
RPL32 location ⇒ 1:52659871-52660498   CU074296,CH242-137L19,1:52548617-52730097
(Clone quality: bE137L19 on chr=1; Num_of_Contigs=1; )
RPL32 location ⇒ 1:88857948-88857559   CU392845,CH242-512A18,1:88831530-88875182
(Clone quality: bE512A18 on chr=1; Num_of_Contigs=8; )
RPL34   ENSSSCG00000009146 8:97472538-97475193   CU463349,CH242-219F15,8:97459206-97488273
(Clone quality: bE219F15 on chr=8; Num_of_Contigs=4; )
RPL35   ENSSSCG00000005595 1:280473464-280479171   CU468031,CH242-524N14,1:280318183-280492192
(Clone quality: bE524N14 on chr=1; Num_of_Contigs=1; )
RPL35A   ENSSSCG00000011856 13:101342916-101346452 CU694544,CH242-123C16,13:101156837-101363233
(Clone quality: bE123C16 on chr=13; Num_of_Contigs=6; ) 		 
RPL36   ENSSSCG00000013525 2:49389222-49391217   FP089464,CH242-231P22,2:49368415-49462890
(Clone quality: bE231P22 on chr=2; Num_of_Contigs=4; )
RPL37 location ⇒ 6:107233486-107233732   CU424463,CH242-176B12,6:107220835-107238879
(Clone quality: bE176B12 on chr=6; Num_of_Contigs=2; )
RPL37 location ⇒ 6:87942462-87942163   CU633944,CH242-23H23,6:87940131-88112656
(Clone quality: bE23H23 on chr=6; Num_of_Contigs=1; )
RPL38   ENSSSCG00000017239 12:4939116-4944225 CU929509,CH242-210O23,12:4890845-5083024
(Clone quality: bE210O23 on chr=12; Num_of_Contigs=5; ) 		 
RPL39L   ENSSSCG00000013221 2:12820271-12820423   CU856067,CH242-88B18,2:12813494-12825674
(Clone quality: bE88B18 on chr=2; Num_of_Contigs=8; )
RPL4   ENSSSCG00000004945 1:171644159-171649451   CU407297,CH242-524I5,1:171642907-171651878
(Clone quality: bE524I5 on chr=1; Num_of_Contigs=20; )
RPL6P10   ENSSSCG00000012032 13:138046855-138047013   CU627998,CH242-60H12,13:138028039-138049302
(Clone quality: bE60H12 on chr=13; Num_of_Contigs=8; )
RPL7 ENSSSCG00000006182 4:64809569-64813351   CU137734,CH242-66B9,4:64759703-64839746
(Clone quality: bE66B9 on chr=4; Num_of_Contigs=10; )
RPL7 location ⇒ 14:96261362-96260940   CT737337,CH242-144N17,14:96111054-96293830
(Clone quality: bE144N17 on chr=14; Num_of_Contigs=1; )
RPL8   ENSSSCG00000005891 4:334401-336898   CU468612,CH242-60P12,4:327380-343622
(Clone quality: bE60P12 on chr=4; Num_of_Contigs=10; )
RPL9   ENSSSCG00000012427 X:60017098-60017676   CU856532,CH242-250L8,X:60014735-60025255
(Clone quality: bE250L8 on chr=X; Num_of_Contigs=5; )
RPLP1   ENSSSCG00000007065 17:19404287-19404598   CU914520,CH242-71M21,17:19394313-19406514
(Clone quality: bE71M21 on chr=17; Num_of_Contigs=7; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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