A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
TMSB4X location ⇒ X:8767337-8767731 FP085461,CH242-524I24,X:8722255-8912483
(Clone quality: bE524I24 on chr=X; Num_of_Contigs=2; ) 		 
TMSB4Y   ENSSSCG00000012120 X:8602757-8603298 FP102063,CH242-76E20,X:8545658-8722254
(Clone quality: bE76E20 on chr=X; Num_of_Contigs=2; ) 		 
TMSL3   ENSSSCG00000012119 X:8601577-8767772    
TMTC1 ENSSSCG00000000539 5:42911576-42928520    
TMTC1 location ⇒ 5:41723853-41723789   CU929384,CH242-123C15,5:41681609-41839585
(Clone quality: bE123C15 on chr=5; Num_of_Contigs=1; )
TMTC1 location ⇒ 5:41793402-41793341   CU929384,CH242-123C15,5:41681609-41839585
(Clone quality: bE123C15 on chr=5; Num_of_Contigs=1; )
TMTC1 location ⇒ 5:42407701-42407765   CU928630,CH242-248B21,5:42377405-42502794
(Clone quality: bE248B21 on chr=5; Num_of_Contigs=2; )
TMTC1 location ⇒ 5:42920575-42920631   CU972367,CH242-508A20,5:42919963-42930645
(Clone quality: bE508A20 on chr=5; Num_of_Contigs=6; )
TMTC3   ENSSSCG00000000927 5:90339464-90386163    
TMTC4   ENSSSCG00000009524 11:70236903-70317268   CU640391,CH242-209C23,11:70209375-70376328
(Clone quality: bE209C23 on chr=11; Num_of_Contigs=1; )
TMUB2   ENSSSCG00000017361 12:16959701-16959811   CU469063,CH242-86P22,12:16957237-16960236
(Clone quality: bE86P22 on chr=12; Num_of_Contigs=21; )
TMX1 ENSSSCG00000005026 1:189208952-189222829   CU076041,CH242-113B16,1:189136748-189226264
(Clone quality: bE113B16 on chr=1; Num_of_Contigs=4; )
TMX2   ENSSSCG00000013176 2:11235446-11246663   CU914175,CH242-140O21,2:11208432-11248177
(Clone quality: bE140O21 on chr=2; Num_of_Contigs=3; )
TMX3   ENSSSCG00000004884 1:161049204-161088890   CU915539,CH242-139I20,1:161011590-161174993
(Clone quality: bE139I20 on chr=1; Num_of_Contigs=1; )
TNC ENSSSCG00000005494 1:268415201-268657770    
TNC location ⇒ 1:268415923-268415516   CU466939,CH242-294C3,1:268387611-268443702
(Clone quality: bE294C3 on chr=1; Num_of_Contigs=9; )
TNC location ⇒ 1:268626056-268624645   CU407235,CH242-418C10,1:268622109-268630777
(Clone quality: bE418C10 on chr=1; Num_of_Contigs=13; )
TNC location ⇒ 1:268629531-268628935   CU407235,CH242-418C10,1:268622109-268630777
(Clone quality: bE418C10 on chr=1; Num_of_Contigs=13; )
TNC location ⇒ 1:268713590-268713183   CU407235,CH242-418C10,1:268713041-268717658
(Clone quality: bE418C10 on chr=1; Num_of_Contigs=13; )
TNF ENSSSCG00000001404 7:27658519-27661277 CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; ) 		 
TNF location ⇒ 7:27658519-27658886 CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; ) 		 
TNF location ⇒ 7:27660069-27660937 CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; ) 		 
TNF location ⇒ 7:27660993-27661277 CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; ) 		 
TNFAIP2 ENSSSCG00000002522 7:130745569-130753746   CU467770,CH242-452K19,7:130745546-130757624
(Clone quality: bE452K19 on chr=7; Num_of_Contigs=13; )
TNFAIP2 location ⇒ 7:130753380-130753484   CU467770,CH242-452K19,7:130745546-130757624
(Clone quality: bE452K19 on chr=7; Num_of_Contigs=13; )
TNFAIP27127 location ⇒ 6:33557577-33557617   FP102369,CH242-128M4,6:33522006-33560344
(Clone quality: bE128M4 on chr=6; Num_of_Contigs=3; )
TNFAIP3 ENSSSCG00000004154 1:27897946-27902856    
TNFAIP3 ENSSSCG00000008691 8:919341-923975   CU930000,CH242-128J21,8:903580-924566
(Clone quality: bE128J21 on chr=8; Num_of_Contigs=8; )
TNFAIP3 ENSSSCG00000009100 8:88730620-88763504   CU655981,CH242-199N6,8:88723729-88771214
(Clone quality: bE199N6 on chr=8; Num_of_Contigs=3; )
TNFAIP3 ENSSSCG00000017091 16:69380354-69407955    
TNFAIP3 location ⇒ 1:27897029-27896976   CU914302,CH242-92E17,1:27896090-27899947
(Clone quality: bE92E17 on chr=1; Num_of_Contigs=10; )
TNFAIP3 location ⇒ 1:27900470-27900153   CU914302,CH242-92E17,1:27900048-27902925
(Clone quality: bE92E17 on chr=1; Num_of_Contigs=10; )
TNFAIP3 location ⇒ 1:27901543-27901360   CU914302,CH242-92E17,1:27900048-27902925
(Clone quality: bE92E17 on chr=1; Num_of_Contigs=10; )
TNFAIP3 location ⇒ 1:27932176-27932476   CU914302,CH242-92E17,1:27928632-27934498
(Clone quality: bE92E17 on chr=1; Num_of_Contigs=10; )
TNFAIP37128 location ⇒ 6:33557577-33557617   FP102369,CH242-128M4,6:33522006-33560344
(Clone quality: bE128M4 on chr=6; Num_of_Contigs=3; )
TNFAIP6 ENSSSCG00000016396 15:133961373-133969056    
TNFAIP6 location ⇒ 15:133961606-133961376   CU856324,CH242-167H23,15:133957988-133963675
(Clone quality: bE167H23 on chr=15; Num_of_Contigs=8; )
TNFAIP6 location ⇒ 15:133961784-133961681   CU856324,CH242-167H23,15:133957988-133963675
(Clone quality: bE167H23 on chr=15; Num_of_Contigs=8; )
TNFAIP6 location ⇒ 15:133962050-133961831   CU856324,CH242-167H23,15:133957988-133963675
(Clone quality: bE167H23 on chr=15; Num_of_Contigs=8; )
TNFAIP6 location ⇒ 15:133969056-133968984   CU856324,CH242-167H23,15:133963776-133969056
(Clone quality: bE167H23 on chr=15; Num_of_Contigs=8; )
TNFAIP67130 location ⇒ 6:33557577-33557617   FP102369,CH242-128M4,6:33522006-33560344
(Clone quality: bE128M4 on chr=6; Num_of_Contigs=3; )
TNFAIP8   ENSSSCG00000014227 2:111684514-111725863    
TNFAIP8L2 ENSSSCG00000006634 4:102048251-102048805 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
TNFAIP8L2 location ⇒ 4:102047821-102047733 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
TNFAIP8L2 location ⇒ 4:102048814-102047879 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
TNFAIP8L2 location ⇒ 4:102050803-102050749 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
TNFAIP8L3   ENSSSCG00000004633 1:125746355-125787710    
TNFRSF10A location ⇒ 1:187872885-187872960   CU633502,CH242-240C20,1:187832890-187878221
(Clone quality: bE240C20 on chr=1; Num_of_Contigs=4; )
TNFRSF10A location ⇒ 1:188087540-188087465   CU606975,CH242-251A8,1:188036812-188088768
(Clone quality: bE251A8 on chr=1; Num_of_Contigs=5; )
TNFRSF10A location ⇒ 1:188102022-188101947   CU606975,CH242-251A8,1:188088869-188146416
(Clone quality: bE251A8 on chr=1; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-8

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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