A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
APOA4 location ⇒ 9:42998731-42998604   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOA4 location ⇒ 9:42999219-42999084   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOA5   ENSSSCG00000015067 9:42976312-42978036   CU582845,CH242-243D19,9:42948512-42978243
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOB location ⇒ 3:109172645-109174453   CU469157,CH242-319L3,3:109165490-109174495
(Clone quality: bE319L3 on chr=3; Num_of_Contigs=2; )
APOBEC1 ENSSSCG00000000668 5:59561983-59565999   CU929253,CH242-247J12,5:59540620-59665539
(Clone quality: bE247J12 on chr=5; Num_of_Contigs=6; )
APOBEC1 ENSSSCG00000001932 7:66465394-66475264    
APOBEC1 ENSSSCG00000010431 14:103519490-103590115    
APOBEC1 ENSSSCG00000011798 13:93990036-94009031   CU466376,CH242-17J7,13:93934222-94016715
(Clone quality: bE17J7 on chr=13; Num_of_Contigs=6; )
APOBEC3F ENSSSCG00000000091 5:5353997-5356390   CU686742,CH242-39B7,5:5353644-5363482
(Clone quality: bE39B7 on chr=5; Num_of_Contigs=13; )
APOBEC3H   ENSSSCG00000000091 5:5353997-5356390   CU686742,CH242-39B7,5:5353644-5363482
(Clone quality: bE39B7 on chr=5; Num_of_Contigs=13; )
APOBEC4   ENSSSCG00000015561 9:117189235-117190335   CU570827,CH242-238C10,9:117181532-117229304
(Clone quality: bE238C10 on chr=9; Num_of_Contigs=5; )
APOC2   ENSSSCG00000003086 6:35876828-35878012   CU459172,CH242-480J10,6:35842343-35886317
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
APOC3 ENSSSCG00000015069 9:43006353-43008697   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOC3 location ⇒ 9:43007049-43007103   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOC3 location ⇒ 9:43007259-43007383   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOC3 location ⇒ 9:43008402-43008517   CU582845,CH242-243D19,9:42983797-43024482
(Clone quality: bE243D19 on chr=9; Num_of_Contigs=5; )
APOC4   ENSSSCG00000003087 6:35879612-35879767   CU459172,CH242-480J10,6:35842343-35886317
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
APOD ENSSSCG00000011831 13:99660657-99679529   CU582896,CH242-39I7,13:99649204-99685305
(Clone quality: bE39I7 on chr=13; Num_of_Contigs=5; )
APOD location ⇒ 13:1926980-1926863   FP003587,CH242-127D11,13:1856315-1986266
(Clone quality: bE127D11 on chr=13; Num_of_Contigs=2; )
APOD location ⇒ 13:2086148-2086031   CU915680,CH242-245B17,13:2056801-2127030
(Clone quality: bE245B17 on chr=13; Num_of_Contigs=5; )
APOD location ⇒ 13:459476-459585   CU463251,CH242-81M7,13:382750-523173
(Clone quality: bE81M7 on chr=13; Num_of_Contigs=3; )
APOD location ⇒ 13:973511-973588   CU633332,CH242-130E2,13:950202-1062148
(Clone quality: bE130E2 on chr=13; Num_of_Contigs=3; )
APOE ENSSSCG00000003088 6:35892837-35935962    
APOE location ⇒ 6:35893680-35892838   CU459172,CH242-480J10,6:35886418-35897236
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
APOE location ⇒ 6:35894245-35894051   CU459172,CH242-480J10,6:35886418-35897236
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
APOE location ⇒ 6:35895061-35894994   CU459172,CH242-480J10,6:35886418-35897236
(Clone quality: bE480J10 on chr=6; Num_of_Contigs=12; )
APOF   ENSSSCG00000000397 5:20738828-20740149   CU655980,CH242-195E17,5:20728687-20784383
(Clone quality: bE195E17 on chr=5; Num_of_Contigs=4; )
APOH ENSSSCG00000017267 12:10664952-10676930   CU466252,CH242-76O22,12:10653725-10706182
(Clone quality: bE76O22 on chr=12; Num_of_Contigs=13; )
APOH location ⇒ 12:10666690-10666491   CU466252,CH242-76O22,12:10653725-10706182
(Clone quality: bE76O22 on chr=12; Num_of_Contigs=13; )
APOH location ⇒ 12:10668798-10668618   CU466252,CH242-76O22,12:10653725-10706182
(Clone quality: bE76O22 on chr=12; Num_of_Contigs=13; )
APOH location ⇒ 12:10671076-10670888   CU466252,CH242-76O22,12:10653725-10706182
(Clone quality: bE76O22 on chr=12; Num_of_Contigs=13; )
APOH location ⇒ 12:10675807-10675631   CU466252,CH242-76O22,12:10653725-10706182
(Clone quality: bE76O22 on chr=12; Num_of_Contigs=13; )
APOL6   ENSSSCG00000000151 5:8374433-8382530    
APOM ENSSSCG00000001411 7:27729744-27732259 CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; ) 		 
APON location ⇒ 5:20749309-20748441   CU655980,CH242-195E17,5:20728687-20784383
(Clone quality: bE195E17 on chr=5; Num_of_Contigs=4; )
APON location ⇒ 5:20749524-20749463   CU655980,CH242-195E17,5:20728687-20784383
(Clone quality: bE195E17 on chr=5; Num_of_Contigs=4; )
APOO   ENSSSCG00000012174 X:18779038-18855029    
APOOL   ENSSSCG00000012459 X:67259566-67332666   CU481471,CH242-254C9,X:67252645-67332667
(Clone quality: bE254C9 on chr=X; Num_of_Contigs=5; )
APP ENSSSCG00000003660 6:65403862-65420062 CR956622,PigE-219N9,6:65300804-65474973
(No clone quality info on bT219N9) 		 
APP ENSSSCG00000012651 X:104479369-104501139   CU856556,CH242-148P15,X:104475247-104501866
(Clone quality: bE148P15 on chr=X; Num_of_Contigs=17; )
APP ENSSSCG00000012023 13:135449857-135508854    
APP ENSSSCG00000012022 13:135342672-135436951    
APP location ⇒ 13:135343642-135342863   CU855651,CH242-286F10,13:135305610-135405108
(Clone quality: bE286F10 on chr=13; Num_of_Contigs=2; )
APP location ⇒ 13:135374849-135374627   CU855651,CH242-286F10,13:135305610-135405108
(Clone quality: bE286F10 on chr=13; Num_of_Contigs=2; )
APP location ⇒ 13:135451825-135452020   CU638821,CH242-104G8,13:135446470-135485814
(Clone quality: bE104G8 on chr=13; Num_of_Contigs=8; )
APP location ⇒ 13:135505961-135506130   CU638821,CH242-104G8,13:135485915-135512155
(Clone quality: bE104G8 on chr=13; Num_of_Contigs=8; )
APPBP2   ENSSSCG00000017678 12:35623636-35683948    
APPL2   ENSSSCG00000000841 5:74941794-74997509   CU928267,CH242-214E9,5:74894282-74998708
(Clone quality: bE214E9 on chr=5; Num_of_Contigs=3; )
APRT   ENSSSCG00000002650 6:495770-498149   FP102571,CH242-151H1,6:488095-498568
(Clone quality: bE151H1 on chr=6; Num_of_Contigs=15; )
APTX   ENSSSCG00000011001 10:31992795-32160184    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-32

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team