A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
NEU3   ENSSSCG00000014849 9:9005756-9017400    
NEUL_PIG   ENSSSCG00000016951 16:41595934-41715233    
NEURL   ENSSSCG00000010603 14:119596316-119614632   CT827843,CH242-252B20,14:119550396-119712070
(Clone quality: bE252B20 on chr=14; Num_of_Contigs=2; )
NEURL1B   ENSSSCG00000016992 16:48958618-48998741   CU914339,CH242-237O4,16:48910418-49002262
(Clone quality: bE237O4 on chr=16; Num_of_Contigs=4; )
NEURL2   ENSSSCG00000007430 17:50145203-50146606    
NEURL3   ENSSSCG00000008124 3:41831445-41833978   FP102745,CH242-70I16,3:41824892-41877353
(Clone quality: bE70I16 on chr=3; Num_of_Contigs=1; )
NEURL4   ENSSSCG00000017941 12:49799024-49811249    
NEUROD1   ENSSSCG00000016011 15:81685295-81686365   CU570999,CH242-123D19,15:81656666-81700422
(Clone quality: bE123D19 on chr=15; Num_of_Contigs=12; )
NEUROD4   ENSSSCG00000000300 5:18565674-18566669   CU466358,CH242-72B12,5:18560277-18585437
(Clone quality: bE72B12 on chr=5; Num_of_Contigs=5; )
NEUROG1   ENSSSCG00000014309 2:125012828-125013568   CU639478,CH242-160M23,2:125004110-125015313
(Clone quality: bE160M23 on chr=2; Num_of_Contigs=23; )
NEXN ENSSSCG00000003768 6:94339523-94600575    
NEXN location ⇒ 6:94462449-94462299   CU693467,CH242-418A17,6:94433687-94463756
(Clone quality: bE418A17 on chr=6; Num_of_Contigs=12; )
NEXN location ⇒ 6:94462610-94462532   CU693467,CH242-418A17,6:94433687-94463756
(Clone quality: bE418A17 on chr=6; Num_of_Contigs=12; )
NEXN location ⇒ 6:94464682-94464603   CU693467,CH242-418A17,6:94463857-94484000
(Clone quality: bE418A17 on chr=6; Num_of_Contigs=12; )
NEXN location ⇒ 6:94600502-94600325   CU693467,CH242-418A17,6:94590304-94608471
(Clone quality: bE418A17 on chr=6; Num_of_Contigs=12; )
NFAM1 ENSSSCG00000000055 5:3374874-3377263   CU639393,CH242-266E14,5:3373729-3381429
(Clone quality: bE266E14 on chr=5; Num_of_Contigs=8; )
NFAM1 location ⇒ 5:3377267-3377201   CU639393,CH242-266E14,5:3373729-3381429
(Clone quality: bE266E14 on chr=5; Num_of_Contigs=8; )
NFAT5 ENSSSCG00000002755 6:12213792-12334637    
NFAT5 location ⇒ 6:1213814-1213713   FP245508,CH242-382A10,6:1204964-1213816
(Clone quality: bE382A10 on chr=6; Num_of_Contigs=3; )
NFAT5 location ⇒ 6:240368-240255   FP102614,CH242-198I21,6:238926-246605
(Clone quality: bE198I21 on chr=6; Num_of_Contigs=22; )
NFAT5 location ⇒ 6:283066-283179   FP102614,CH242-198I21,6:282956-287128
(Clone quality: bE198I21 on chr=6; Num_of_Contigs=22; )
NFAT5 location ⇒ 6:511178-511263   FP102571,CH242-151H1,6:501926-511266
(Clone quality: bE151H1 on chr=6; Num_of_Contigs=15; )
NFATC1 ENSSSCG00000004856 1:153492030-153534412    
NFATC1 location ⇒ 1:153375404-153375056   FP017301,CH242-194G6,1:153361173-153395050
(Clone quality: bE194G6 on chr=1; Num_of_Contigs=4; )
NFATC1 location ⇒ 1:153472283-153472488   FP015906,CH242-58B2,1:153471041-153472531
(Clone quality: bE58B2 on chr=1; Num_of_Contigs=7; )
NFATC1 location ⇒ 1:153498063-153497715   FP015906,CH242-58B2,1:153497669-153501042
(Clone quality: bE58B2 on chr=1; Num_of_Contigs=7; )
NFATC1 location ⇒ 1:153534414-153533313   FP015906,CH242-58B2,1:153532081-153541972
(Clone quality: bE58B2 on chr=1; Num_of_Contigs=7; )
NFATC2 ENSSSCG00000007477 17:54981839-55084049    
NFATC2 ENSSSCG00000007808 3:16722518-16735377    
NFATC2 location ⇒ 17:55015998-55015930 CR956634,CH242-277I8,17:54851513-55055790
(No clone quality info on bE277I8) 		 
NFATC2 location ⇒ 17:55017424-55017219 CR956634,CH242-277I8,17:54851513-55055790
(No clone quality info on bE277I8) 		 
NFATC2 location ⇒ 17:55060734-55060657 CR956389,CH242-228K14,17:55055791-55100651
(Clone quality: bE228K14 on chr=17; Num_of_Contigs=4; ) 		 
NFATC2IP ENSSSCG00000007808 3:16722518-16735377    
NFATC2IP location ⇒ 3:120794024-120794085   CU657960,CH242-18E4,3:120779115-120817331
(Clone quality: bE18E4 on chr=3; Num_of_Contigs=3; )
NFATC2IP location ⇒ 3:19209189-19209246   CU856186,CH242-132C11,3:19139491-19318207
(Clone quality: bE132C11 on chr=3; Num_of_Contigs=1; )
NFATC2IP location ⇒ 3:63880721-63880628   FP089556,CH242-274G10,3:63873288-63904492
(Clone quality: bE274G10 on chr=3; Num_of_Contigs=6; )
NFATC2IP location ⇒ 3:70086398-70086305   CU466465,CH242-320P6,3:70083957-70092931
(Clone quality: bE320P6 on chr=3; Num_of_Contigs=7; )
NFATC3 location ⇒ 8:1285691-1285800   CU694640,CH242-5O13,8:1283009-1292117
(Clone quality: bE5O13 on chr=8; Num_of_Contigs=13; )
NFATC3 location ⇒ 8:1554002-1554111   CU915501,CH242-408L20,8:1553894-1561475
(Clone quality: bE408L20 on chr=8; Num_of_Contigs=7; )
NFATC3 location ⇒ 8:2150297-2150398   FP090894,CH242-176H1,8:2145055-2152876
(Clone quality: bE176H1 on chr=8; Num_of_Contigs=12; )
NFATC3 location ⇒ 8:4203016-4202899   CU915529,CH242-94K3,8:4201414-4205707
(Clone quality: bE94K3 on chr=8; Num_of_Contigs=14; )
NFATC4 ENSSSCG00000001986 7:81260967-81459550    
NFATC4 location ⇒ 7:81261804-81261932   CT997804,CH242-280B15,7:81187212-81281808
(Clone quality: bE280B15 on chr=7; Num_of_Contigs=5; )
NFATC4 location ⇒ 7:81263158-81263298   CT997804,CH242-280B15,7:81187212-81281808
(Clone quality: bE280B15 on chr=7; Num_of_Contigs=5; )
NFATC4 location ⇒ 7:81263774-81263946   CT997804,CH242-280B15,7:81187212-81281808
(Clone quality: bE280B15 on chr=7; Num_of_Contigs=5; )
NFATC4 location ⇒ 7:81264255-81264357   CT997804,CH242-280B15,7:81187212-81281808
(Clone quality: bE280B15 on chr=7; Num_of_Contigs=5; )
NFE2   ENSSSCG00000000289 5:17974152-18057454    
NFE2L1 ENSSSCG00000017525 12:21724827-21730258   FP016123,CH242-397L8,12:21724779-21742672
(Clone quality: bE397L8 on chr=12; Num_of_Contigs=6; )
NFE2L2   ENSSSCG00000015987 15:77786728-77790896   CU862048,CH242-277M15,15:77779409-77792374
(Clone quality: bE277M15 on chr=15; Num_of_Contigs=5; )
NFE2L3   ENSSSCG00000004333 1:61099173-61099418   CU311189,CH242-351M17,1:61036386-61117255
(Clone quality: bE351M17 on chr=1; Num_of_Contigs=2; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-29

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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