A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
LIN7A   ENSSSCG00000000938 5:93975868-94126749    
LIN7B   ENSSSCG00000003157 6:37858210-37860570   FP102974,CH242-517N5,6:37857864-37860715
(Clone quality: bE517N5 on chr=6; Num_of_Contigs=15; )
LIN7C   ENSSSCG00000013334 2:30880685-30887738 CU462866,CH242-145P6,2:30836629-30959778
(Clone quality: bE145P6 on chr=2; Num_of_Contigs=2; ) 		 
LINGO1   ENSSSCG00000001872 7:62892021-62893865   CT954219,CH242-524G5,7:62811732-62908878
(Clone quality: bE524G5 on chr=7; Num_of_Contigs=3; )
LINGO2   ENSSSCG00000011009 10:37166377-37168212   FP089507,CH242-53P19,10:37131176-37192295
(Clone quality: bE53P19 on chr=10; Num_of_Contigs=2; )
LINGO3   ENSSSCG00000013462 2:47231782-47233560   FP089467,CH242-185G23,2:47173729-47314390
(Clone quality: bE185G23 on chr=2; Num_of_Contigs=3; )
LINS1   ENSSSCG00000004820 1:146869727-146877307   CU372904,CH242-503E13,1:146764885-146968309
(Clone quality: bE503E13 on chr=1; Num_of_Contigs=1; )
LIPA ENSSSCG00000010450 14:106030695-106066495    
LIPC   ENSSSCG00000004596 1:117434552-117479204    
LIPE ENSSSCG00000003018 6:34152191-34162930   FP102452,CH242-68N5,6:34131281-34214206
(Clone quality: bE68N5 on chr=6; Num_of_Contigs=4; )
LIPE location ⇒ 6:34153169-34154115   FP102452,CH242-68N5,6:34131281-34214206
(Clone quality: bE68N5 on chr=6; Num_of_Contigs=4; )
LIPE location ⇒ 6:34161485-34161906   FP102452,CH242-68N5,6:34131281-34214206
(Clone quality: bE68N5 on chr=6; Num_of_Contigs=4; )
LIPE location ⇒ 6:34162286-34162930   FP102452,CH242-68N5,6:34131281-34214206
(Clone quality: bE68N5 on chr=6; Num_of_Contigs=4; )
LIPE location ⇒ 6:34303698-34303054   FP102858,CH242-504I8,6:34299131-34307485
(Clone quality: bE504I8 on chr=6; Num_of_Contigs=13; )
LIPG   ENSSSCG00000004509 1:102027256-102054445   CU914253,CH242-233O22,1:102007743-102054889
(Clone quality: bE233O22 on chr=1; Num_of_Contigs=2; )
LIPH   ENSSSCG00000011793 13:93377090-93392638   CU582974,CH242-334N13,13:93366305-93425883
(Clone quality: bE334N13 on chr=13; Num_of_Contigs=9; )
LIPI   ENSSSCG00000012004 13:128800720-128839801   CT956011,CH242-1N22,13:128694756-128843965
(Clone quality: bE1N22 on chr=13; Num_of_Contigs=2; )
LIPK   ENSSSCG00000010442 14:105557660-105577813    
LIPM   ENSSSCG00000010444 14:105626048-105646726    
LIPN   ENSSSCG00000010443 14:105593036-105608751   CU407100,CH242-6G15,14:105566333-105633478
(Clone quality: bE6G15 on chr=14; Num_of_Contigs=2; )
LIPP_PIG   ENSSSCG00000010658 14:132562702-132606475    
LIPP_PIG   ENSSSCG00000010658 14:132562702-132606475    
LIPT2   ENSSSCG00000014841 9:8559592-8561138   CU639465,CH242-2B7,9:8543423-8581057
(Clone quality: bE2B7 on chr=9; Num_of_Contigs=8; )
LIR ENSSSCG00000006392 4:93840441-93848088 CU138477,CH242-105O19,4:93708821-93889364
(Clone quality: bE105O19 on chr=4; Num_of_Contigs=5; ) 		 
LITAF ENSSSCG00000007941 3:33833325-33856201   CU928821,CH242-271C18,3:33828913-33892865
(Clone quality: bE271C18 on chr=3; Num_of_Contigs=7; )
LITAF ENSSSCG00000007898 3:28184283-28219364    
LITH_PIG   ENSSSCG00000008256 3:59425104-59427818   CU694523,CH242-64C23,3:59423549-59428298
(Clone quality: bE64C23 on chr=3; Num_of_Contigs=16; )
LIX1   ENSSSCG00000014174 2:92837187-92868539   CU928756,CH242-516H16,2:92731351-92870880
(Clone quality: bE516H16 on chr=2; Num_of_Contigs=2; )
LIX1L   ENSSSCG00000006683 4:103474886-103486763    
LLPH   ENSSSCG00000000472 5:30361202-30363359   CU929864,CH242-114K23,5:30356127-30374012
(Clone quality: bE114K23 on chr=5; Num_of_Contigs=8; )
LLT1 ENSSSCG00000000657 5:58877403-58915787    
LLT1 location ⇒ 5:58880380-58880191   CU928410,CH242-273D7,5:58872346-58901639
(Clone quality: bE273D7 on chr=5; Num_of_Contigs=2; )
LLT1 location ⇒ 5:58888008-58887899   CU928410,CH242-273D7,5:58872346-58901639
(Clone quality: bE273D7 on chr=5; Num_of_Contigs=2; )
LLT1 location ⇒ 5:58889063-58888567   CU928410,CH242-273D7,5:58872346-58901639
(Clone quality: bE273D7 on chr=5; Num_of_Contigs=2; )
LMAN1 ENSSSCG00000004908 1:168497952-168519138   CU076088,CH242-77M4,1:168411868-168596075
(Clone quality: bE77M4 on chr=1; Num_of_Contigs=1; )
LMAN1 ENSSSCG00000001899 7:64218294-64230538   CU468845,CH242-162A4,7:64176153-64332301
(Clone quality: bE162A4 on chr=7; Num_of_Contigs=2; )
LMAN1 location ⇒ 1:168511218-168511412   CU076088,CH242-77M4,1:168411868-168596075
(Clone quality: bE77M4 on chr=1; Num_of_Contigs=1; )
LMAN1 location ⇒ 1:168511541-168511615   CU076088,CH242-77M4,1:168411868-168596075
(Clone quality: bE77M4 on chr=1; Num_of_Contigs=1; )
LMAN1 location ⇒ 1:168516199-168516352   CU076088,CH242-77M4,1:168411868-168596075
(Clone quality: bE77M4 on chr=1; Num_of_Contigs=1; )
LMAN1 location ⇒ 1:168518570-168518692   CU076088,CH242-77M4,1:168411868-168596075
(Clone quality: bE77M4 on chr=1; Num_of_Contigs=1; )
LMAN1L   ENSSSCG00000001899 7:64218294-64230538   CU468845,CH242-162A4,7:64176153-64332301
(Clone quality: bE162A4 on chr=7; Num_of_Contigs=2; )
LMAN2   ENSSSCG00000014040 2:69701410-69714618 CU915382,CH242-167E23,2:69697156-69852996
(Clone quality: bE167E23 on chr=2; Num_of_Contigs=8; ) 		 
LMAN2L   ENSSSCG00000008199 3:52131944-52148592   FP102744,CH242-70H5,3:52125606-52152005
(Clone quality: bE70H5 on chr=3; Num_of_Contigs=11; )
LMBR1   ENSSSCG00000016412 18:905504-1007568    
LMBR1L   ENSSSCG00000000189 5:13744512-13758153   CU633656,CH242-19B12,5:13743175-13761164
(Clone quality: bE19B12 on chr=5; Num_of_Contigs=10; )
LMBRD1   ENSSSCG00000004272 1:52346439-52453930    
LMBRD2   ENSSSCG00000016834 16:18826764-18856887 CU856110,CH242-36H10,16:18824515-19007053
(Clone quality: bE36H10 on chr=16; Num_of_Contigs=2; ) 		 
LMCD1   ENSSSCG00000011538 13:54500916-54527447    
LMF1   ENSSSCG00000008009 3:35809708-35811722   FP016225,CH242-86N4,3:35795727-35815497
(Clone quality: bE86N4 on chr=3; Num_of_Contigs=9; )
LMF2   ENSSSCG00000000964 5:99694027-99698521   CU929756,CH242-288F8,5:99690941-99727774
(Clone quality: bE288F8 on chr=5; Num_of_Contigs=8; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-45

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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